Strain Fitness in Bosea sp. OAE506 around ABIE41_RS05895

Experiment: R2A with 2-pentyl-furan 21.3684 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS05890 and ABIE41_RS05895 are separated by 127 nucleotidesABIE41_RS05895 and ABIE41_RS05900 are separated by 140 nucleotides ABIE41_RS05890: ABIE41_RS05890 - aminopeptidase, at 1,211,351 to 1,212,607 _RS05890 ABIE41_RS05895: ABIE41_RS05895 - diaminopropionate ammonia-lyase, at 1,212,735 to 1,213,910 _RS05895 ABIE41_RS05900: ABIE41_RS05900 - gamma-glutamyltransferase, at 1,214,051 to 1,215,649 _RS05900 Position (kb) 1212 1213 1214Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1211.766 kb on + strand, within ABIE41_RS05890at 1211.767 kb on - strand, within ABIE41_RS05890at 1212.007 kb on + strand, within ABIE41_RS05890at 1212.141 kb on + strand, within ABIE41_RS05890at 1212.142 kb on - strand, within ABIE41_RS05890at 1212.198 kb on + strand, within ABIE41_RS05890at 1212.199 kb on - strand, within ABIE41_RS05890at 1212.369 kb on + strand, within ABIE41_RS05890at 1212.369 kb on + strand, within ABIE41_RS05890at 1212.369 kb on + strand, within ABIE41_RS05890at 1212.369 kb on + strand, within ABIE41_RS05890at 1212.370 kb on - strand, within ABIE41_RS05890at 1212.438 kb on + strand, within ABIE41_RS05890at 1212.438 kb on + strand, within ABIE41_RS05890at 1212.439 kb on - strand, within ABIE41_RS05890at 1212.439 kb on - strand, within ABIE41_RS05890at 1212.439 kb on - strand, within ABIE41_RS05890at 1212.439 kb on - strand, within ABIE41_RS05890at 1212.641 kb on + strandat 1212.641 kb on + strandat 1212.641 kb on + strandat 1212.641 kb on + strandat 1212.641 kb on + strandat 1212.642 kb on - strandat 1212.820 kb on + strandat 1212.820 kb on + strandat 1212.821 kb on - strandat 1212.821 kb on - strandat 1212.821 kb on - strandat 1212.853 kb on - strand, within ABIE41_RS05895at 1212.853 kb on - strand, within ABIE41_RS05895at 1212.853 kb on - strand, within ABIE41_RS05895at 1212.853 kb on - strand, within ABIE41_RS05895at 1212.975 kb on + strand, within ABIE41_RS05895at 1212.975 kb on + strand, within ABIE41_RS05895at 1212.975 kb on + strand, within ABIE41_RS05895at 1212.975 kb on + strand, within ABIE41_RS05895at 1212.975 kb on + strand, within ABIE41_RS05895at 1212.975 kb on + strand, within ABIE41_RS05895at 1212.976 kb on - strand, within ABIE41_RS05895at 1212.976 kb on - strand, within ABIE41_RS05895at 1212.976 kb on - strand, within ABIE41_RS05895at 1212.976 kb on - strand, within ABIE41_RS05895at 1212.976 kb on - strand, within ABIE41_RS05895at 1212.976 kb on - strand, within ABIE41_RS05895at 1212.976 kb on - strand, within ABIE41_RS05895at 1212.976 kb on - strand, within ABIE41_RS05895at 1213.245 kb on + strand, within ABIE41_RS05895at 1213.245 kb on + strand, within ABIE41_RS05895at 1213.245 kb on + strand, within ABIE41_RS05895at 1213.245 kb on + strand, within ABIE41_RS05895at 1213.246 kb on - strand, within ABIE41_RS05895at 1213.246 kb on - strand, within ABIE41_RS05895at 1213.246 kb on - strand, within ABIE41_RS05895at 1213.310 kb on + strand, within ABIE41_RS05895at 1213.311 kb on - strand, within ABIE41_RS05895at 1213.359 kb on + strand, within ABIE41_RS05895at 1213.359 kb on + strand, within ABIE41_RS05895at 1213.359 kb on + strand, within ABIE41_RS05895at 1213.359 kb on + strand, within ABIE41_RS05895at 1213.360 kb on - strand, within ABIE41_RS05895at 1213.361 kb on + strand, within ABIE41_RS05895at 1213.361 kb on + strand, within ABIE41_RS05895at 1213.361 kb on + strand, within ABIE41_RS05895at 1213.362 kb on - strand, within ABIE41_RS05895at 1213.362 kb on - strand, within ABIE41_RS05895at 1213.608 kb on + strand, within ABIE41_RS05895at 1213.608 kb on + strand, within ABIE41_RS05895at 1213.608 kb on + strand, within ABIE41_RS05895at 1213.609 kb on - strand, within ABIE41_RS05895at 1213.609 kb on - strand, within ABIE41_RS05895at 1213.609 kb on - strand, within ABIE41_RS05895at 1213.609 kb on - strand, within ABIE41_RS05895at 1213.879 kb on - strandat 1213.879 kb on - strandat 1213.919 kb on - strandat 1213.987 kb on + strandat 1213.987 kb on + strandat 1213.988 kb on - strandat 1213.988 kb on - strandat 1213.988 kb on - strandat 1214.046 kb on + strandat 1214.047 kb on - strandat 1214.047 kb on - strandat 1214.047 kb on - strandat 1214.081 kb on - strandat 1214.081 kb on - strandat 1214.361 kb on - strand, within ABIE41_RS05900at 1214.425 kb on + strand, within ABIE41_RS05900at 1214.425 kb on + strand, within ABIE41_RS05900at 1214.471 kb on + strand, within ABIE41_RS05900at 1214.570 kb on + strand, within ABIE41_RS05900at 1214.571 kb on - strand, within ABIE41_RS05900at 1214.571 kb on - strand, within ABIE41_RS05900at 1214.636 kb on + strand, within ABIE41_RS05900at 1214.636 kb on + strand, within ABIE41_RS05900at 1214.636 kb on + strand, within ABIE41_RS05900at 1214.636 kb on + strand, within ABIE41_RS05900at 1214.636 kb on + strand, within ABIE41_RS05900at 1214.637 kb on - strand, within ABIE41_RS05900at 1214.637 kb on - strand, within ABIE41_RS05900at 1214.753 kb on + strand, within ABIE41_RS05900at 1214.753 kb on + strand, within ABIE41_RS05900

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM
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1,211,766 + ABIE41_RS05890 0.33 +0.3
1,211,767 - ABIE41_RS05890 0.33 +0.4
1,212,007 + ABIE41_RS05890 0.52 -0.4
1,212,141 + ABIE41_RS05890 0.63 +0.1
1,212,142 - ABIE41_RS05890 0.63 +1.0
1,212,198 + ABIE41_RS05890 0.67 +0.3
1,212,199 - ABIE41_RS05890 0.67 -0.1
1,212,369 + ABIE41_RS05890 0.81 +0.1
1,212,369 + ABIE41_RS05890 0.81 -1.6
1,212,369 + ABIE41_RS05890 0.81 -0.3
1,212,369 + ABIE41_RS05890 0.81 +0.4
1,212,370 - ABIE41_RS05890 0.81 +0.3
1,212,438 + ABIE41_RS05890 0.86 +0.1
1,212,438 + ABIE41_RS05890 0.86 +0.0
1,212,439 - ABIE41_RS05890 0.87 -0.3
1,212,439 - ABIE41_RS05890 0.87 -0.7
1,212,439 - ABIE41_RS05890 0.87 +0.4
1,212,439 - ABIE41_RS05890 0.87 -0.3
1,212,641 + +2.7
1,212,641 + -1.4
1,212,641 + -0.6
1,212,641 + +0.0
1,212,641 + +3.0
1,212,642 - -1.6
1,212,820 + +0.2
1,212,820 + -0.8
1,212,821 - -0.1
1,212,821 - -0.6
1,212,821 - -0.8
1,212,853 - ABIE41_RS05895 0.10 -0.1
1,212,853 - ABIE41_RS05895 0.10 +0.4
1,212,853 - ABIE41_RS05895 0.10 +0.4
1,212,853 - ABIE41_RS05895 0.10 +0.6
1,212,975 + ABIE41_RS05895 0.20 +0.0
1,212,975 + ABIE41_RS05895 0.20 -3.0
1,212,975 + ABIE41_RS05895 0.20 +0.2
1,212,975 + ABIE41_RS05895 0.20 +1.7
1,212,975 + ABIE41_RS05895 0.20 -0.3
1,212,975 + ABIE41_RS05895 0.20 -0.6
1,212,976 - ABIE41_RS05895 0.20 -2.6
1,212,976 - ABIE41_RS05895 0.20 +0.3
1,212,976 - ABIE41_RS05895 0.20 -0.6
1,212,976 - ABIE41_RS05895 0.20 +1.1
1,212,976 - ABIE41_RS05895 0.20 -0.3
1,212,976 - ABIE41_RS05895 0.20 -1.5
1,212,976 - ABIE41_RS05895 0.20 -0.0
1,212,976 - ABIE41_RS05895 0.20 +1.5
1,213,245 + ABIE41_RS05895 0.43 -1.5
1,213,245 + ABIE41_RS05895 0.43 -1.5
1,213,245 + ABIE41_RS05895 0.43 +0.6
1,213,245 + ABIE41_RS05895 0.43 -0.0
1,213,246 - ABIE41_RS05895 0.43 +1.9
1,213,246 - ABIE41_RS05895 0.43 +0.2
1,213,246 - ABIE41_RS05895 0.43 +0.9
1,213,310 + ABIE41_RS05895 0.49 -0.9
1,213,311 - ABIE41_RS05895 0.49 +0.1
1,213,359 + ABIE41_RS05895 0.53 +0.5
1,213,359 + ABIE41_RS05895 0.53 -1.1
1,213,359 + ABIE41_RS05895 0.53 +0.2
1,213,359 + ABIE41_RS05895 0.53 -0.2
1,213,360 - ABIE41_RS05895 0.53 -1.5
1,213,361 + ABIE41_RS05895 0.53 +0.9
1,213,361 + ABIE41_RS05895 0.53 -0.3
1,213,361 + ABIE41_RS05895 0.53 +2.7
1,213,362 - ABIE41_RS05895 0.53 +2.1
1,213,362 - ABIE41_RS05895 0.53 -1.1
1,213,608 + ABIE41_RS05895 0.74 +1.1
1,213,608 + ABIE41_RS05895 0.74 +0.0
1,213,608 + ABIE41_RS05895 0.74 +0.2
1,213,609 - ABIE41_RS05895 0.74 +0.2
1,213,609 - ABIE41_RS05895 0.74 +1.4
1,213,609 - ABIE41_RS05895 0.74 -0.6
1,213,609 - ABIE41_RS05895 0.74 +1.3
1,213,879 - +0.5
1,213,879 - +0.1
1,213,919 - -0.1
1,213,987 + -0.3
1,213,987 + -0.0
1,213,988 - +0.0
1,213,988 - +1.1
1,213,988 - -0.4
1,214,046 + -0.0
1,214,047 - -2.4
1,214,047 - +0.3
1,214,047 - +0.2
1,214,081 - -0.3
1,214,081 - -1.8
1,214,361 - ABIE41_RS05900 0.19 -0.5
1,214,425 + ABIE41_RS05900 0.23 -1.4
1,214,425 + ABIE41_RS05900 0.23 -0.3
1,214,471 + ABIE41_RS05900 0.26 -0.4
1,214,570 + ABIE41_RS05900 0.32 -0.9
1,214,571 - ABIE41_RS05900 0.33 -2.6
1,214,571 - ABIE41_RS05900 0.33 -0.3
1,214,636 + ABIE41_RS05900 0.37 -0.9
1,214,636 + ABIE41_RS05900 0.37 +1.3
1,214,636 + ABIE41_RS05900 0.37 -0.5
1,214,636 + ABIE41_RS05900 0.37 +0.0
1,214,636 + ABIE41_RS05900 0.37 -0.6
1,214,637 - ABIE41_RS05900 0.37 -0.6
1,214,637 - ABIE41_RS05900 0.37 +0.0
1,214,753 + ABIE41_RS05900 0.44 +0.5
1,214,753 + ABIE41_RS05900 0.44 +0.1

Or see this region's nucleotide sequence