Experiment: R2A with 2-pentyl-furan 21.3684 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS05795 and ABIE41_RS05800 are separated by 180 nucleotides ABIE41_RS05800 and ABIE41_RS05805 are separated by 68 nucleotides ABIE41_RS05805 and ABIE41_RS05810 are separated by 9 nucleotides
ABIE41_RS05795: ABIE41_RS05795 - crosslink repair DNA glycosylase YcaQ family protein, at 1,193,220 to 1,194,404
_RS05795
ABIE41_RS05800: ABIE41_RS05800 - hypothetical protein, at 1,194,585 to 1,194,806
_RS05800
ABIE41_RS05805: ABIE41_RS05805 - hypothetical protein, at 1,194,875 to 1,195,171
_RS05805
ABIE41_RS05810: ABIE41_RS05810 - WD40 repeat domain-containing protein, at 1,195,181 to 1,196,191
_RS05810
Position (kb) 1194
1195
1196 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1193.883 kb on + strand, within ABIE41_RS05795 at 1193.884 kb on + strand, within ABIE41_RS05795 at 1193.884 kb on + strand, within ABIE41_RS05795 at 1193.884 kb on + strand, within ABIE41_RS05795 at 1193.884 kb on + strand, within ABIE41_RS05795 at 1193.885 kb on - strand, within ABIE41_RS05795 at 1193.885 kb on - strand, within ABIE41_RS05795 at 1193.885 kb on - strand, within ABIE41_RS05795 at 1193.885 kb on - strand, within ABIE41_RS05795 at 1193.885 kb on - strand, within ABIE41_RS05795 at 1193.885 kb on - strand, within ABIE41_RS05795 at 1194.115 kb on + strand, within ABIE41_RS05795 at 1194.115 kb on + strand, within ABIE41_RS05795 at 1194.115 kb on + strand, within ABIE41_RS05795 at 1194.115 kb on + strand, within ABIE41_RS05795 at 1194.116 kb on - strand, within ABIE41_RS05795 at 1194.116 kb on - strand, within ABIE41_RS05795 at 1194.116 kb on - strand, within ABIE41_RS05795 at 1194.190 kb on + strand, within ABIE41_RS05795 at 1194.190 kb on + strand, within ABIE41_RS05795 at 1194.191 kb on - strand, within ABIE41_RS05795 at 1194.191 kb on - strand, within ABIE41_RS05795 at 1194.191 kb on - strand, within ABIE41_RS05795 at 1194.191 kb on - strand, within ABIE41_RS05795 at 1194.191 kb on - strand, within ABIE41_RS05795 at 1194.262 kb on + strand, within ABIE41_RS05795 at 1194.262 kb on + strand, within ABIE41_RS05795 at 1194.262 kb on + strand, within ABIE41_RS05795 at 1194.263 kb on - strand, within ABIE41_RS05795 at 1194.447 kb on + strand at 1194.448 kb on - strand at 1194.448 kb on - strand at 1194.533 kb on + strand at 1194.533 kb on + strand at 1194.533 kb on + strand at 1194.533 kb on + strand at 1194.533 kb on + strand at 1194.533 kb on + strand at 1194.533 kb on + strand at 1194.534 kb on - strand at 1194.534 kb on - strand at 1195.182 kb on + strand at 1195.182 kb on + strand at 1195.182 kb on + strand at 1195.353 kb on + strand, within ABIE41_RS05810 at 1195.564 kb on + strand, within ABIE41_RS05810 at 1195.564 kb on + strand, within ABIE41_RS05810 at 1195.565 kb on - strand, within ABIE41_RS05810
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM remove 1,193,883 + ABIE41_RS05795 0.56 -0.1 1,193,884 + ABIE41_RS05795 0.56 -0.5 1,193,884 + ABIE41_RS05795 0.56 -0.4 1,193,884 + ABIE41_RS05795 0.56 -2.6 1,193,884 + ABIE41_RS05795 0.56 -2.0 1,193,885 - ABIE41_RS05795 0.56 -0.0 1,193,885 - ABIE41_RS05795 0.56 +1.3 1,193,885 - ABIE41_RS05795 0.56 -0.8 1,193,885 - ABIE41_RS05795 0.56 -0.5 1,193,885 - ABIE41_RS05795 0.56 +0.1 1,193,885 - ABIE41_RS05795 0.56 -0.4 1,194,115 + ABIE41_RS05795 0.76 -0.3 1,194,115 + ABIE41_RS05795 0.76 -1.9 1,194,115 + ABIE41_RS05795 0.76 -0.6 1,194,115 + ABIE41_RS05795 0.76 +1.7 1,194,116 - ABIE41_RS05795 0.76 +0.7 1,194,116 - ABIE41_RS05795 0.76 +1.6 1,194,116 - ABIE41_RS05795 0.76 -2.4 1,194,190 + ABIE41_RS05795 0.82 +3.3 1,194,190 + ABIE41_RS05795 0.82 -0.2 1,194,191 - ABIE41_RS05795 0.82 +0.3 1,194,191 - ABIE41_RS05795 0.82 +1.0 1,194,191 - ABIE41_RS05795 0.82 +0.1 1,194,191 - ABIE41_RS05795 0.82 -2.9 1,194,191 - ABIE41_RS05795 0.82 +0.0 1,194,262 + ABIE41_RS05795 0.88 +0.1 1,194,262 + ABIE41_RS05795 0.88 +0.9 1,194,262 + ABIE41_RS05795 0.88 -0.1 1,194,263 - ABIE41_RS05795 0.88 +1.5 1,194,447 + +2.0 1,194,448 - -1.3 1,194,448 - -1.6 1,194,533 + -0.0 1,194,533 + -0.0 1,194,533 + +0.3 1,194,533 + -2.2 1,194,533 + +1.6 1,194,533 + -0.6 1,194,533 + -0.4 1,194,534 - -0.3 1,194,534 - +0.7 1,195,182 + -1.8 1,195,182 + +1.7 1,195,182 + -1.0 1,195,353 + ABIE41_RS05810 0.17 +1.3 1,195,564 + ABIE41_RS05810 0.38 +0.4 1,195,564 + ABIE41_RS05810 0.38 -2.4 1,195,565 - ABIE41_RS05810 0.38 -1.6
Or see this region's nucleotide sequence