Strain Fitness in Bosea sp. OAE506 around ABIE41_RS04135

Experiment: R2A with 2-pentyl-furan 21.3684 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS04130 and ABIE41_RS04135 are separated by 69 nucleotidesABIE41_RS04135 and ABIE41_RS04140 are separated by 62 nucleotidesABIE41_RS04140 and ABIE41_RS04145 are separated by 241 nucleotides ABIE41_RS04130: ABIE41_RS04130 - diguanylate cyclase, at 853,085 to 854,290 _RS04130 ABIE41_RS04135: ABIE41_RS04135 - glutaminase, at 854,360 to 855,292 _RS04135 ABIE41_RS04140: ABIE41_RS04140 - hypothetical protein, at 855,355 to 855,798 _RS04140 ABIE41_RS04145: ABIE41_RS04145 - methyl-accepting chemotaxis protein, at 856,040 to 857,782 _RS04145 Position (kb) 854 855 856Strain fitness (log2 ratio) -2 -1 0 1 2 3at 853.394 kb on + strand, within ABIE41_RS04130at 853.394 kb on + strand, within ABIE41_RS04130at 853.394 kb on + strand, within ABIE41_RS04130at 853.395 kb on - strand, within ABIE41_RS04130at 853.395 kb on - strand, within ABIE41_RS04130at 853.395 kb on - strand, within ABIE41_RS04130at 853.395 kb on - strand, within ABIE41_RS04130at 853.434 kb on - strand, within ABIE41_RS04130at 853.649 kb on + strand, within ABIE41_RS04130at 853.649 kb on + strand, within ABIE41_RS04130at 853.649 kb on + strand, within ABIE41_RS04130at 853.650 kb on - strand, within ABIE41_RS04130at 853.650 kb on - strand, within ABIE41_RS04130at 853.655 kb on + strand, within ABIE41_RS04130at 853.655 kb on + strand, within ABIE41_RS04130at 853.655 kb on + strand, within ABIE41_RS04130at 853.655 kb on + strand, within ABIE41_RS04130at 853.655 kb on + strand, within ABIE41_RS04130at 853.655 kb on + strand, within ABIE41_RS04130at 853.655 kb on + strand, within ABIE41_RS04130at 853.655 kb on + strand, within ABIE41_RS04130at 853.655 kb on + strand, within ABIE41_RS04130at 853.655 kb on + strand, within ABIE41_RS04130at 853.655 kb on + strand, within ABIE41_RS04130at 853.656 kb on - strand, within ABIE41_RS04130at 853.656 kb on - strand, within ABIE41_RS04130at 853.656 kb on - strand, within ABIE41_RS04130at 853.656 kb on - strand, within ABIE41_RS04130at 853.656 kb on - strand, within ABIE41_RS04130at 853.656 kb on - strand, within ABIE41_RS04130at 853.811 kb on + strand, within ABIE41_RS04130at 853.811 kb on + strand, within ABIE41_RS04130at 853.841 kb on + strand, within ABIE41_RS04130at 853.841 kb on + strand, within ABIE41_RS04130at 853.841 kb on + strand, within ABIE41_RS04130at 853.841 kb on + strand, within ABIE41_RS04130at 853.842 kb on - strand, within ABIE41_RS04130at 853.842 kb on - strand, within ABIE41_RS04130at 854.064 kb on - strand, within ABIE41_RS04130at 854.064 kb on - strand, within ABIE41_RS04130at 854.177 kb on + strandat 854.288 kb on + strandat 854.288 kb on + strandat 854.288 kb on + strandat 854.288 kb on + strandat 854.288 kb on + strandat 854.438 kb on + strandat 854.438 kb on + strandat 854.438 kb on + strandat 854.438 kb on + strandat 854.438 kb on + strandat 854.438 kb on + strandat 854.438 kb on + strandat 854.438 kb on + strandat 854.438 kb on + strandat 854.439 kb on - strandat 854.440 kb on + strandat 854.876 kb on + strand, within ABIE41_RS04135at 854.876 kb on + strand, within ABIE41_RS04135at 854.876 kb on + strand, within ABIE41_RS04135at 854.877 kb on - strand, within ABIE41_RS04135at 854.877 kb on - strand, within ABIE41_RS04135at 854.877 kb on - strand, within ABIE41_RS04135at 854.877 kb on - strand, within ABIE41_RS04135at 854.877 kb on - strand, within ABIE41_RS04135at 854.930 kb on + strand, within ABIE41_RS04135at 854.930 kb on + strand, within ABIE41_RS04135at 854.930 kb on + strand, within ABIE41_RS04135at 854.931 kb on - strand, within ABIE41_RS04135at 854.931 kb on - strand, within ABIE41_RS04135at 854.988 kb on - strand, within ABIE41_RS04135at 855.526 kb on + strand, within ABIE41_RS04140at 855.526 kb on + strand, within ABIE41_RS04140at 855.526 kb on + strand, within ABIE41_RS04140at 855.527 kb on - strand, within ABIE41_RS04140at 855.527 kb on - strand, within ABIE41_RS04140at 855.527 kb on - strand, within ABIE41_RS04140at 855.527 kb on - strand, within ABIE41_RS04140at 855.527 kb on - strand, within ABIE41_RS04140at 855.527 kb on - strand, within ABIE41_RS04140at 855.529 kb on - strand, within ABIE41_RS04140at 855.886 kb on + strandat 855.886 kb on + strandat 855.887 kb on - strandat 855.887 kb on - strandat 855.887 kb on - strandat 855.888 kb on + strandat 855.889 kb on - strandat 856.023 kb on - strandat 856.023 kb on - strandat 856.054 kb on + strandat 856.055 kb on - strandat 856.055 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM
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853,394 + ABIE41_RS04130 0.26 -0.9
853,394 + ABIE41_RS04130 0.26 -1.8
853,394 + ABIE41_RS04130 0.26 +0.6
853,395 - ABIE41_RS04130 0.26 +2.7
853,395 - ABIE41_RS04130 0.26 +0.4
853,395 - ABIE41_RS04130 0.26 +0.7
853,395 - ABIE41_RS04130 0.26 +1.3
853,434 - ABIE41_RS04130 0.29 -0.1
853,649 + ABIE41_RS04130 0.47 -0.9
853,649 + ABIE41_RS04130 0.47 -0.4
853,649 + ABIE41_RS04130 0.47 +0.2
853,650 - ABIE41_RS04130 0.47 -0.2
853,650 - ABIE41_RS04130 0.47 -0.2
853,655 + ABIE41_RS04130 0.47 -0.3
853,655 + ABIE41_RS04130 0.47 -1.3
853,655 + ABIE41_RS04130 0.47 +0.4
853,655 + ABIE41_RS04130 0.47 -0.4
853,655 + ABIE41_RS04130 0.47 -1.1
853,655 + ABIE41_RS04130 0.47 +0.3
853,655 + ABIE41_RS04130 0.47 -0.3
853,655 + ABIE41_RS04130 0.47 -0.8
853,655 + ABIE41_RS04130 0.47 +2.7
853,655 + ABIE41_RS04130 0.47 +0.5
853,655 + ABIE41_RS04130 0.47 +1.0
853,656 - ABIE41_RS04130 0.47 -2.3
853,656 - ABIE41_RS04130 0.47 -0.9
853,656 - ABIE41_RS04130 0.47 -2.5
853,656 - ABIE41_RS04130 0.47 -0.6
853,656 - ABIE41_RS04130 0.47 -2.1
853,656 - ABIE41_RS04130 0.47 -1.7
853,811 + ABIE41_RS04130 0.60 -0.3
853,811 + ABIE41_RS04130 0.60 -0.4
853,841 + ABIE41_RS04130 0.63 +1.3
853,841 + ABIE41_RS04130 0.63 -0.2
853,841 + ABIE41_RS04130 0.63 -1.0
853,841 + ABIE41_RS04130 0.63 -2.3
853,842 - ABIE41_RS04130 0.63 -0.6
853,842 - ABIE41_RS04130 0.63 -0.6
854,064 - ABIE41_RS04130 0.81 +0.0
854,064 - ABIE41_RS04130 0.81 +0.2
854,177 + -2.6
854,288 + -1.0
854,288 + -0.2
854,288 + +0.3
854,288 + +1.1
854,288 + -0.2
854,438 + -0.4
854,438 + +0.6
854,438 + -0.3
854,438 + -0.7
854,438 + +0.8
854,438 + +0.4
854,438 + +0.2
854,438 + +0.9
854,438 + -0.4
854,439 - -0.9
854,440 + -1.7
854,876 + ABIE41_RS04135 0.55 +0.4
854,876 + ABIE41_RS04135 0.55 -1.9
854,876 + ABIE41_RS04135 0.55 -1.7
854,877 - ABIE41_RS04135 0.55 -0.6
854,877 - ABIE41_RS04135 0.55 +0.4
854,877 - ABIE41_RS04135 0.55 +0.7
854,877 - ABIE41_RS04135 0.55 -0.0
854,877 - ABIE41_RS04135 0.55 -2.3
854,930 + ABIE41_RS04135 0.61 -2.2
854,930 + ABIE41_RS04135 0.61 -0.3
854,930 + ABIE41_RS04135 0.61 -1.2
854,931 - ABIE41_RS04135 0.61 +1.2
854,931 - ABIE41_RS04135 0.61 -0.2
854,988 - ABIE41_RS04135 0.67 -0.0
855,526 + ABIE41_RS04140 0.39 -2.0
855,526 + ABIE41_RS04140 0.39 -0.7
855,526 + ABIE41_RS04140 0.39 +1.0
855,527 - ABIE41_RS04140 0.39 +1.2
855,527 - ABIE41_RS04140 0.39 -1.1
855,527 - ABIE41_RS04140 0.39 +1.5
855,527 - ABIE41_RS04140 0.39 +0.4
855,527 - ABIE41_RS04140 0.39 +0.9
855,527 - ABIE41_RS04140 0.39 -1.8
855,529 - ABIE41_RS04140 0.39 +2.4
855,886 + -0.3
855,886 + -0.3
855,887 - -2.0
855,887 - -0.1
855,887 - -0.8
855,888 + +3.5
855,889 - +0.9
856,023 - +0.3
856,023 - -0.3
856,054 + +0.5
856,055 - +1.5
856,055 - -0.0

Or see this region's nucleotide sequence