Strain Fitness in Pseudomonas sp. RS175 around PFR28_05130

Experiment: L-Carnitine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Carnitine (C)
5,874,988	+				+2.1
5,874,988	+				+0.8
5,874,988	+				-0.4
5,874,989	-				-0.6
5,874,989	-				-0.2
5,874,989	-				+0.3
5,875,188	-				+0.2
5,875,189	+				-1.4
5,875,189	+				+1.4
5,875,190	-				+0.3
5,875,190	-				+0.6
5,875,232	+				+0.2
5,875,453	+				+2.4
5,875,455	+				+2.0
5,875,455	+				+1.8
5,875,456	-				+0.1
5,875,456	-				+0.9
5,875,456	-				-1.2
5,875,470	+				+0.4
5,875,477	-				+0.3
5,875,568	+				+1.8
5,875,568	+				-0.9
5,875,568	+				+0.6
5,875,568	+				-0.2
5,875,568	+				-0.2
5,875,568	+				+0.8
5,875,568	+				+1.0
5,875,568	+				-0.9
5,875,568	+				-2.1
5,875,568	+				-0.0
5,875,568	+				-0.0
5,875,569	-				+0.3
5,875,569	-				+0.5
5,875,569	-				+0.4
5,875,569	-				-0.1
5,875,569	-				+0.3
5,875,569	-				-1.0
5,875,569	-				+0.7
5,875,569	-				+1.1
5,875,569	-				-0.4
5,875,598	+				+0.6
5,875,598	+				-0.9
5,875,598	+				-1.1
5,875,598	+				+1.2
5,875,599	-				-1.6
5,875,599	-				+1.4
5,875,609	-				+0.1
5,875,616	+				-0.8
5,875,617	-				+0.0
5,875,617	-				+0.2
5,875,618	+				-0.4
5,875,618	+				-2.4
5,875,618	+				-1.0
5,875,618	+				-0.7
5,875,618	+				-0.3
5,875,618	+				+2.2
5,875,618	+				+0.7
5,875,618	+				+2.4
5,875,618	+				-0.4
5,875,618	+				+1.0
5,875,618	+				-0.2
5,875,618	+				+1.4
5,875,619	-				-1.4
5,875,619	-				+1.7
5,875,619	-				+0.3
5,875,619	-				+1.2
5,875,619	-				-0.7
5,875,619	-				+1.2
5,875,619	-				-0.9
5,875,619	-				+1.2
5,875,638	+				-2.3
5,875,638	+				-2.7
5,875,692	-				+2.3
5,875,702	+				+1.4
5,875,859	+				+1.2
5,875,859	+				+1.4
5,875,860	-				-0.6
5,875,877	+				-0.2
5,875,877	+				-0.2
5,875,877	+				-0.0
5,875,877	+				+3.6
5,875,878	-				+2.7
5,875,878	-				+1.4
5,875,878	-				+0.1
5,875,915	+		PFR28_05130	0.11	-1.7
5,875,915	+		PFR28_05130	0.11	+0.4
5,875,915	+		PFR28_05130	0.11	+3.4
5,876,085	+		PFR28_05130	0.17	-0.2
5,876,300	+		PFR28_05130	0.25	+1.4
5,876,300	+		PFR28_05130	0.25	-0.2
5,876,300	+		PFR28_05130	0.25	+1.8
5,876,300	+		PFR28_05130	0.25	+1.4
5,876,300	+		PFR28_05130	0.25	-0.2
5,876,301	-		PFR28_05130	0.25	+1.4
5,876,301	-		PFR28_05130	0.25	-1.2
5,876,342	+		PFR28_05130	0.27	-0.2
5,876,342	+		PFR28_05130	0.27	+1.4
5,876,342	+		PFR28_05130	0.27	+1.4
5,876,342	+		PFR28_05130	0.27	+2.4
5,876,342	+		PFR28_05130	0.27	-0.2
5,876,342	+		PFR28_05130	0.27	+1.4
5,876,342	+		PFR28_05130	0.27	+1.4
5,876,343	-		PFR28_05130	0.27	+0.4
5,876,343	-		PFR28_05130	0.27	-1.4
5,876,343	-		PFR28_05130	0.27	+1.4
5,876,343	-		PFR28_05130	0.27	+1.2
5,876,343	-		PFR28_05130	0.27	-1.6
5,876,343	-		PFR28_05130	0.27	+1.0
5,876,502	-		PFR28_05130	0.33	+3.8
5,876,555	+		PFR28_05130	0.35	+1.4
5,876,555	+		PFR28_05130	0.35	+1.4
5,876,556	-		PFR28_05130	0.35	+3.2
5,876,582	+		PFR28_05130	0.36	+1.4
5,876,582	+		PFR28_05130	0.36	+2.1
5,876,583	-		PFR28_05130	0.36	-0.2
5,876,583	-		PFR28_05130	0.36	+0.4
5,876,583	-		PFR28_05130	0.36	-0.2
5,876,583	-		PFR28_05130	0.36	+0.4
5,876,639	+		PFR28_05130	0.38	+1.4
5,876,639	+		PFR28_05130	0.38	+1.4
5,876,640	-		PFR28_05130	0.38	+1.4
5,876,772	-		PFR28_05130	0.44	+0.4
5,876,816	+		PFR28_05130	0.45	+0.8
5,876,816	+		PFR28_05130	0.45	+0.8
5,876,817	-		PFR28_05130	0.45	+0.4
5,876,817	-		PFR28_05130	0.45	-0.2
5,876,817	-		PFR28_05130	0.45	-0.6
5,876,882	+		PFR28_05130	0.48	+4.9
5,876,882	+		PFR28_05130	0.48	+2.4
5,876,882	+		PFR28_05130	0.48	+1.4
5,876,882	+		PFR28_05130	0.48	+1.4
5,876,883	-		PFR28_05130	0.48	-0.2
5,876,883	-		PFR28_05130	0.48	+0.4
5,876,883	-		PFR28_05130	0.48	-0.7
5,876,884	+		PFR28_05130	0.48	-0.2
5,876,884	+		PFR28_05130	0.48	+0.4
5,876,885	-		PFR28_05130	0.48	+0.1
5,876,885	-		PFR28_05130	0.48	-0.7
5,876,885	-		PFR28_05130	0.48	+0.4
5,876,892	+		PFR28_05130	0.48	-1.6
5,876,892	+		PFR28_05130	0.48	-1.2
5,876,892	+		PFR28_05130	0.48	+0.4
5,876,892	+		PFR28_05130	0.48	+1.4
5,876,916	-		PFR28_05130	0.49	+0.4
5,876,924	+		PFR28_05130	0.49	+3.8
5,876,925	-		PFR28_05130	0.49	-1.4
5,876,925	-		PFR28_05130	0.49	+2.0
5,877,242	+		PFR28_05130	0.62	+1.4
5,877,242	+		PFR28_05130	0.62	+0.4
5,877,374	+		PFR28_05130	0.67	-0.6
5,877,374	+		PFR28_05130	0.67	+1.8
5,877,374	+		PFR28_05130	0.67	-0.9
5,877,375	-		PFR28_05130	0.67	-0.2
5,877,375	-		PFR28_05130	0.67	-0.9
5,877,376	+		PFR28_05130	0.67	+1.4
5,877,376	+		PFR28_05130	0.67	+0.4
5,877,377	-		PFR28_05130	0.67	+1.4
5,877,377	-		PFR28_05130	0.67	+0.4
5,877,405	-		PFR28_05130	0.68	+0.9
5,877,518	+		PFR28_05130	0.72	+3.0
5,877,620	+		PFR28_05130	0.76	+1.4
5,877,620	+		PFR28_05130	0.76	+1.6
5,877,620	+		PFR28_05130	0.76	+2.1
5,877,620	+		PFR28_05130	0.76	+0.9
5,877,620	+		PFR28_05130	0.76	+0.3
5,877,620	+		PFR28_05130	0.76	-0.1
5,877,621	-		PFR28_05130	0.76	-0.6
5,877,621	-		PFR28_05130	0.76	+0.6
5,877,707	+		PFR28_05130	0.79	-1.7
5,877,707	+		PFR28_05130	0.79	+2.0
5,877,707	+		PFR28_05130	0.79	-1.2
5,877,707	+		PFR28_05130	0.79	+1.4
5,877,707	+		PFR28_05130	0.79	+1.9
5,877,707	+		PFR28_05130	0.79	-1.6
5,877,708	-		PFR28_05130	0.80	+2.3
5,877,708	-		PFR28_05130	0.80	-0.9
5,877,708	-		PFR28_05130	0.80	-1.2
5,877,708	-		PFR28_05130	0.80	-1.6
5,877,708	-		PFR28_05130	0.80	+3.0
5,877,708	-		PFR28_05130	0.80	+0.4
5,877,749	+		PFR28_05130	0.81	+1.4
5,877,750	-		PFR28_05130	0.81	+1.4
5,877,750	-		PFR28_05130	0.81	+0.4
5,877,750	-		PFR28_05130	0.81	+2.4
5,877,752	+		PFR28_05130	0.81	+0.2
5,877,752	+		PFR28_05130	0.81	+2.0
5,877,802	+		PFR28_05130	0.83	+1.6
5,877,802	+		PFR28_05130	0.83	+2.0
5,877,803	-		PFR28_05130	0.83	-0.2
5,877,803	-		PFR28_05130	0.83	-1.7
5,877,831	+		PFR28_05130	0.84	+0.4
5,878,789	+		PFR28_05131	0.72	-2.7
5,878,789	+		PFR28_05131	0.72	+2.0
5,878,790	-		PFR28_05131	0.73	-0.8
5,878,790	-		PFR28_05131	0.73	+1.0
5,878,790	-		PFR28_05131	0.73	+1.4
5,878,790	-		PFR28_05131	0.73	-1.8
5,878,790	-		PFR28_05131	0.73	+1.6
5,878,790	-		PFR28_05131	0.73	+1.8
5,878,876	+		PFR28_05131	0.84	+2.2
5,878,877	-		PFR28_05131	0.84	+0.8
5,878,877	-		PFR28_05131	0.84	+2.1
5,878,877	-		PFR28_05131	0.84	-0.3
5,879,111	+				+1.8
5,879,112	-				-1.2
5,879,141	-				+1.1
5,879,212	+				+0.5
5,879,212	+				-0.9
5,879,212	+				-0.6