Strain Fitness in Pseudomonas sp. RS175 around PFR28_04539

Experiment: L-Carnitine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Carnitine (C)
5,180,002	+		PFR28_04537	0.80	+1.5
5,180,002	+		PFR28_04537	0.80	+1.2
5,180,002	+		PFR28_04537	0.80	+0.9
5,180,002	+		PFR28_04537	0.80	+0.1
5,180,003	-		PFR28_04537	0.80	-0.5
5,180,066	+		PFR28_04537	0.87	+0.0
5,180,082	+		PFR28_04537	0.89	-0.9
5,180,083	-		PFR28_04537	0.89	-0.7
5,180,123	+				-0.3
5,180,139	+				-0.6
5,180,139	+				-0.2
5,180,139	+				+0.5
5,180,140	-				-0.6
5,180,140	-				+1.4
5,180,157	+				+0.7
5,180,158	-				+0.4
5,180,289	+		PFR28_04538	0.18	-0.8
5,180,289	+		PFR28_04538	0.18	-0.3
5,180,289	+		PFR28_04538	0.18	+0.6
5,180,289	+		PFR28_04538	0.18	-0.0
5,180,290	-		PFR28_04538	0.18	-1.2
5,180,290	-		PFR28_04538	0.18	-0.2
5,180,613	+		PFR28_04538	0.80	-0.7
5,180,664	+				-0.0
5,180,664	+				-0.9
5,180,665	-				+0.4
5,180,665	-				+0.0
5,180,674	+				-0.4
5,180,674	+				-0.1
5,180,674	+				-0.6
5,180,674	+				-2.1
5,180,674	+				+0.7
5,180,674	+				-0.6
5,180,675	-				-0.6
5,180,675	-				+0.5
5,180,745	+				-0.5
5,180,790	+				+0.8
5,180,790	+				+0.4
5,180,790	+				-0.7
5,180,791	-				+1.0
5,180,791	-				+0.6
5,180,791	-				-1.8
5,180,791	-				-0.0
5,180,791	-				-3.0
5,180,791	-				+1.0
5,180,824	+				-1.3
5,180,825	-				-0.6
5,180,825	-				-0.2
5,180,907	+				+0.8
5,180,907	+				+0.8
5,180,908	-				-1.4
5,180,908	-				-1.3
5,181,020	-		PFR28_04539	0.11	+0.0
5,181,020	-		PFR28_04539	0.11	+0.9
5,181,039	+		PFR28_04539	0.13	+0.2
5,181,040	-		PFR28_04539	0.13	-0.6
5,181,040	-		PFR28_04539	0.13	-0.0
5,181,052	+		PFR28_04539	0.14	+0.0
5,181,053	-		PFR28_04539	0.14	+0.8
5,181,053	-		PFR28_04539	0.14	+0.5
5,181,160	+		PFR28_04539	0.21	+0.6
5,181,160	+		PFR28_04539	0.21	+2.8
5,181,160	+		PFR28_04539	0.21	+0.0
5,181,161	-		PFR28_04539	0.21	-0.2
5,181,161	-		PFR28_04539	0.21	+1.1
5,181,221	+		PFR28_04539	0.25	+1.4
5,181,383	+		PFR28_04539	0.37	+0.4
5,181,384	-		PFR28_04539	0.37	-0.3
5,181,384	-		PFR28_04539	0.37	+0.3
5,181,385	+		PFR28_04539	0.37	+0.7
5,181,385	+		PFR28_04539	0.37	+0.8
5,181,385	+		PFR28_04539	0.37	-0.4
5,181,385	+		PFR28_04539	0.37	+1.2
5,181,385	+		PFR28_04539	0.37	-0.0
5,181,385	+		PFR28_04539	0.37	-0.1
5,181,385	+		PFR28_04539	0.37	+3.0
5,181,385	+		PFR28_04539	0.37	-1.4
5,181,386	-		PFR28_04539	0.37	-1.6
5,181,386	-		PFR28_04539	0.37	+0.8
5,181,386	-		PFR28_04539	0.37	-0.1
5,181,386	-		PFR28_04539	0.37	-2.8
5,181,386	-		PFR28_04539	0.37	+0.1
5,181,386	-		PFR28_04539	0.37	+0.6
5,181,386	-		PFR28_04539	0.37	-0.9
5,181,386	-		PFR28_04539	0.37	+0.1
5,181,389	+		PFR28_04539	0.37	-1.1
5,181,389	+		PFR28_04539	0.37	+0.3
5,181,389	+		PFR28_04539	0.37	+0.8
5,181,389	+		PFR28_04539	0.37	-0.7
5,181,389	+		PFR28_04539	0.37	-1.9
5,181,389	+		PFR28_04539	0.37	+1.7
5,181,389	+		PFR28_04539	0.37	+0.5
5,181,389	+		PFR28_04539	0.37	-1.3
5,181,389	+		PFR28_04539	0.37	-0.2
5,181,389	+		PFR28_04539	0.37	-3.2
5,181,389	+		PFR28_04539	0.37	-1.3
5,181,389	+		PFR28_04539	0.37	-0.6
5,181,389	+		PFR28_04539	0.37	-0.6
5,181,389	+		PFR28_04539	0.37	-0.0
5,181,389	+		PFR28_04539	0.37	-0.5
5,181,389	+		PFR28_04539	0.37	-1.0
5,181,389	+		PFR28_04539	0.37	+1.5
5,181,389	+		PFR28_04539	0.37	+0.3
5,181,390	-		PFR28_04539	0.37	-0.5
5,181,390	-		PFR28_04539	0.37	+0.3
5,181,390	-		PFR28_04539	0.37	+0.3
5,181,390	-		PFR28_04539	0.37	-0.2
5,181,390	-		PFR28_04539	0.37	+1.2
5,181,390	-		PFR28_04539	0.37	+0.2
5,181,390	-		PFR28_04539	0.37	+0.0
5,181,390	-		PFR28_04539	0.37	-1.3
5,181,390	-		PFR28_04539	0.37	+1.4
5,181,390	-		PFR28_04539	0.37	+0.8
5,181,390	-		PFR28_04539	0.37	+1.4
5,181,390	-		PFR28_04539	0.37	+1.0
5,181,390	-		PFR28_04539	0.37	+0.0
5,181,390	-		PFR28_04539	0.37	+0.3
5,181,390	-		PFR28_04539	0.37	+0.4
5,181,390	-		PFR28_04539	0.37	+0.3
5,181,390	-		PFR28_04539	0.37	+0.7
5,181,394	+		PFR28_04539	0.37	+0.7
5,181,394	+		PFR28_04539	0.37	+1.3
5,181,394	+		PFR28_04539	0.37	-2.2
5,181,394	+		PFR28_04539	0.37	-0.2
5,181,394	+		PFR28_04539	0.37	-0.6
5,181,395	-		PFR28_04539	0.37	-1.2
5,181,395	-		PFR28_04539	0.37	-2.0
5,181,395	-		PFR28_04539	0.37	+0.1
5,181,395	-		PFR28_04539	0.37	+0.6
5,181,395	-		PFR28_04539	0.37	+0.5
5,181,395	-		PFR28_04539	0.37	-0.0
5,181,395	-		PFR28_04539	0.37	-1.1
5,181,395	-		PFR28_04539	0.37	+0.4
5,181,395	-		PFR28_04539	0.37	-0.6
5,181,395	-		PFR28_04539	0.37	+0.0
5,181,430	+		PFR28_04539	0.40	-0.1
5,181,430	+		PFR28_04539	0.40	+0.0
5,181,430	+		PFR28_04539	0.40	+0.6
5,181,430	+		PFR28_04539	0.40	+0.3
5,181,430	+		PFR28_04539	0.40	-0.1
5,181,431	-		PFR28_04539	0.40	+0.3
5,181,431	-		PFR28_04539	0.40	+1.0
5,181,431	-		PFR28_04539	0.40	-0.8
5,181,431	-		PFR28_04539	0.40	-1.8
5,181,431	-		PFR28_04539	0.40	+0.4
5,181,494	+		PFR28_04539	0.44	+0.5
5,181,589	+		PFR28_04539	0.51	+0.4
5,181,589	+		PFR28_04539	0.51	-1.1
5,181,589	+		PFR28_04539	0.51	+0.1
5,181,589	+		PFR28_04539	0.51	-0.2
5,181,589	+		PFR28_04539	0.51	+0.7
5,181,589	+		PFR28_04539	0.51	+0.6
5,181,589	+		PFR28_04539	0.51	+1.4
5,181,589	+		PFR28_04539	0.51	-0.0
5,181,589	+		PFR28_04539	0.51	+1.0
5,181,590	-		PFR28_04539	0.51	-0.1
5,181,590	-		PFR28_04539	0.51	+0.1
5,181,590	-		PFR28_04539	0.51	+0.1
5,181,590	-		PFR28_04539	0.51	+0.1
5,181,590	-		PFR28_04539	0.51	+0.1
5,181,593	+		PFR28_04539	0.51	-1.9
5,181,593	+		PFR28_04539	0.51	+1.1
5,181,593	+		PFR28_04539	0.51	+0.9
5,181,594	-		PFR28_04539	0.51	-0.7
5,181,736	+		PFR28_04539	0.61	-0.8
5,181,737	-		PFR28_04539	0.61	-0.2
5,181,737	-		PFR28_04539	0.61	+0.5
5,181,764	+		PFR28_04539	0.63	-0.3
5,181,765	-		PFR28_04539	0.63	+1.0
5,181,765	-		PFR28_04539	0.63	+0.6
5,181,862	+		PFR28_04539	0.70	-0.7
5,181,863	-		PFR28_04539	0.70	+1.3
5,181,863	-		PFR28_04539	0.70	-0.3
5,181,985	+		PFR28_04539	0.78	-0.0
5,181,986	-		PFR28_04539	0.78	+0.6
5,182,290	-				-2.9
5,182,294	+				-0.2
5,182,360	+				+0.7
5,182,360	+				+3.1
5,182,360	+				-1.6
5,182,360	+				+1.8
5,182,361	-				-1.6
5,182,361	-				-0.1
5,182,361	-				-1.3
5,182,361	-				+0.6
5,182,375	+				-0.4
5,182,396	+				-1.9
5,182,396	+				-0.8
5,182,396	+				+1.7
5,182,396	+				-0.9
5,182,396	+				-0.6
5,182,396	+				+0.7
5,182,396	+				+1.6
5,182,396	+				+2.4
5,182,396	+				+1.5
5,182,396	+				-0.0
5,182,396	+				-1.3
5,182,396	+				+1.4
5,182,396	+				+0.3
5,182,396	+				-0.2
5,182,396	+				+0.5
5,182,396	+				+0.5
5,182,396	+				-2.5
5,182,397	-				+1.5
5,182,397	-				-2.4
5,182,397	-				-0.9
5,182,397	-				+0.3
5,182,397	-				-1.9
5,182,397	-				-0.3
5,182,397	-				-1.2
5,182,397	-				-1.7
5,182,397	-				+0.6
5,182,397	-				-0.5
5,182,397	-				-0.4
5,182,397	-				-0.1
5,182,397	-				+1.4
5,182,397	-				+0.8
5,182,397	-				-0.2
5,182,397	-				-0.3
5,182,397	-				-1.2
5,182,495	+				-0.3
5,182,513	+		PFR28_04540	0.11	+0.2
5,182,513	+		PFR28_04540	0.11	-0.6
5,182,513	+		PFR28_04540	0.11	-0.1
5,182,513	+		PFR28_04540	0.11	+0.6
5,182,513	+		PFR28_04540	0.11	+0.8
5,182,613	-		PFR28_04540	0.19	-0.5
5,182,714	+		PFR28_04540	0.28	-1.1
5,182,715	-		PFR28_04540	0.28	-0.6
5,182,715	-		PFR28_04540	0.28	+1.0
5,182,715	-		PFR28_04540	0.28	+0.1
5,182,715	-		PFR28_04540	0.28	+0.2
5,182,715	-		PFR28_04540	0.28	-0.9
5,182,715	-		PFR28_04540	0.28	+0.4
5,182,834	+		PFR28_04540	0.38	-2.1
5,182,834	+		PFR28_04540	0.38	+0.1
5,182,834	+		PFR28_04540	0.38	-0.5
5,182,835	-		PFR28_04540	0.38	-0.3
5,182,835	-		PFR28_04540	0.38	+0.6
5,182,835	-		PFR28_04540	0.38	-1.1
5,182,835	-		PFR28_04540	0.38	-1.4
5,182,835	-		PFR28_04540	0.38	-1.7
5,183,009	+		PFR28_04540	0.52	-0.9
5,183,009	+		PFR28_04540	0.52	-0.5
5,183,009	+		PFR28_04540	0.52	-1.5
5,183,009	+		PFR28_04540	0.52	-0.5
5,183,009	+		PFR28_04540	0.52	-0.3
5,183,009	+		PFR28_04540	0.52	-0.0
5,183,010	-		PFR28_04540	0.53	+3.4
5,183,010	-		PFR28_04540	0.53	+1.2
5,183,010	-		PFR28_04540	0.53	-0.1
5,183,010	-		PFR28_04540	0.53	+0.3
5,183,012	+		PFR28_04540	0.53	-0.4
5,183,012	+		PFR28_04540	0.53	-0.2
5,183,012	+		PFR28_04540	0.53	-0.2
5,183,013	-		PFR28_04540	0.53	-0.7
5,183,076	+		PFR28_04540	0.58	-2.0
5,183,076	+		PFR28_04540	0.58	-0.9
5,183,076	+		PFR28_04540	0.58	+1.4
5,183,076	+		PFR28_04540	0.58	-2.9
5,183,076	+		PFR28_04540	0.58	-1.5
5,183,076	+		PFR28_04540	0.58	+0.5
5,183,076	+		PFR28_04540	0.58	-0.7
5,183,076	+		PFR28_04540	0.58	-0.9
5,183,076	+		PFR28_04540	0.58	-0.1
5,183,076	+		PFR28_04540	0.58	-1.1
5,183,076	+		PFR28_04540	0.58	-0.9
5,183,076	+		PFR28_04540	0.58	-3.1
5,183,076	+		PFR28_04540	0.58	+0.0
5,183,076	+		PFR28_04540	0.58	+0.7
5,183,076	+		PFR28_04540	0.58	-0.6
5,183,077	-		PFR28_04540	0.58	+0.4
5,183,077	-		PFR28_04540	0.58	+0.3
5,183,077	-		PFR28_04540	0.58	-1.9
5,183,077	-		PFR28_04540	0.58	-0.2
5,183,077	-		PFR28_04540	0.58	+0.4
5,183,077	-		PFR28_04540	0.58	-1.3
5,183,077	-		PFR28_04540	0.58	-2.6
5,183,089	+		PFR28_04540	0.59	+0.8
5,183,089	+		PFR28_04540	0.59	-1.8
5,183,089	+		PFR28_04540	0.59	+0.0
5,183,089	+		PFR28_04540	0.59	+0.8
5,183,090	-		PFR28_04540	0.59	-0.1
5,183,090	-		PFR28_04540	0.59	-0.2
5,183,090	-		PFR28_04540	0.59	-0.6
5,183,090	-		PFR28_04540	0.59	-0.8
5,183,180	-		PFR28_04540	0.67	+0.5
5,183,191	+		PFR28_04540	0.68	+0.5
5,183,221	+		PFR28_04540	0.70	+0.4
5,183,221	+		PFR28_04540	0.70	-0.8
5,183,221	+		PFR28_04540	0.70	-0.2
5,183,221	+		PFR28_04540	0.70	-0.3
5,183,221	+		PFR28_04540	0.70	-0.5
5,183,221	+		PFR28_04540	0.70	-2.7
5,183,221	+		PFR28_04540	0.70	+0.4
5,183,221	+		PFR28_04540	0.70	-2.5
5,183,222	-		PFR28_04540	0.70	+2.7
5,183,222	-		PFR28_04540	0.70	-0.4
5,183,222	-		PFR28_04540	0.70	+0.1
5,183,222	-		PFR28_04540	0.70	+0.6
5,183,222	-		PFR28_04540	0.70	+0.4
5,183,222	-		PFR28_04540	0.70	+1.3
5,183,222	-		PFR28_04540	0.70	-0.9
5,183,222	-		PFR28_04540	0.70	+0.5
5,183,222	-		PFR28_04540	0.70	+0.7
5,183,222	-		PFR28_04540	0.70	-0.6
5,183,222	-		PFR28_04540	0.70	-0.6
5,183,242	+		PFR28_04540	0.72	-0.8
5,183,242	+		PFR28_04540	0.72	+0.5
5,183,242	+		PFR28_04540	0.72	-0.4
5,183,242	+		PFR28_04540	0.72	-1.1
5,183,242	+		PFR28_04540	0.72	-0.2
5,183,242	+		PFR28_04540	0.72	+0.5
5,183,242	+		PFR28_04540	0.72	+0.5
5,183,242	+		PFR28_04540	0.72	-0.3
5,183,243	-		PFR28_04540	0.72	-0.1
5,183,243	-		PFR28_04540	0.72	+0.5
5,183,243	-		PFR28_04540	0.72	-0.3
5,183,243	-		PFR28_04540	0.72	-1.5
5,183,243	-		PFR28_04540	0.72	-0.1
5,183,243	-		PFR28_04540	0.72	+0.4