Experiment: R2A with 2-pentyl-furan 21.3684 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS23570 and ABIE41_RS23575 are separated by 3 nucleotides ABIE41_RS23575 and ABIE41_RS23580 are separated by 109 nucleotides
ABIE41_RS23570: ABIE41_RS23570 - zinc-binding alcohol dehydrogenase family protein, at 4,858,365 to 4,859,378
_RS23570
ABIE41_RS23575: ABIE41_RS23575 - BMP family protein, at 4,859,382 to 4,860,386
_RS23575
ABIE41_RS23580: ABIE41_RS23580 - aldehyde dehydrogenase family protein, at 4,860,496 to 4,861,941
_RS23580
Position (kb) 4859
4860
4861 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4858.629 kb on + strand, within ABIE41_RS23570 at 4858.629 kb on + strand, within ABIE41_RS23570 at 4858.802 kb on - strand, within ABIE41_RS23570 at 4859.838 kb on + strand, within ABIE41_RS23575 at 4859.839 kb on - strand, within ABIE41_RS23575 at 4859.873 kb on - strand, within ABIE41_RS23575 at 4859.918 kb on + strand, within ABIE41_RS23575 at 4859.918 kb on + strand, within ABIE41_RS23575 at 4859.918 kb on + strand, within ABIE41_RS23575 at 4859.918 kb on + strand, within ABIE41_RS23575 at 4859.918 kb on + strand, within ABIE41_RS23575 at 4859.918 kb on + strand, within ABIE41_RS23575 at 4859.918 kb on + strand, within ABIE41_RS23575 at 4859.918 kb on + strand, within ABIE41_RS23575 at 4859.919 kb on - strand, within ABIE41_RS23575 at 4859.919 kb on - strand, within ABIE41_RS23575 at 4859.919 kb on - strand, within ABIE41_RS23575 at 4859.919 kb on - strand, within ABIE41_RS23575 at 4859.919 kb on - strand, within ABIE41_RS23575 at 4859.998 kb on + strand, within ABIE41_RS23575 at 4859.998 kb on + strand, within ABIE41_RS23575 at 4859.998 kb on + strand, within ABIE41_RS23575 at 4859.998 kb on + strand, within ABIE41_RS23575 at 4859.998 kb on + strand, within ABIE41_RS23575 at 4859.998 kb on + strand, within ABIE41_RS23575 at 4859.999 kb on - strand, within ABIE41_RS23575 at 4859.999 kb on - strand, within ABIE41_RS23575 at 4860.238 kb on + strand, within ABIE41_RS23575 at 4860.239 kb on - strand, within ABIE41_RS23575 at 4860.509 kb on + strand at 4860.509 kb on + strand at 4860.530 kb on + strand at 4860.530 kb on + strand at 4860.530 kb on + strand at 4860.546 kb on - strand at 4860.569 kb on + strand at 4860.570 kb on - strand at 4860.570 kb on - strand at 4860.753 kb on - strand, within ABIE41_RS23580 at 4860.753 kb on - strand, within ABIE41_RS23580 at 4860.851 kb on + strand, within ABIE41_RS23580 at 4860.851 kb on + strand, within ABIE41_RS23580 at 4860.851 kb on + strand, within ABIE41_RS23580 at 4860.852 kb on - strand, within ABIE41_RS23580 at 4860.852 kb on - strand, within ABIE41_RS23580 at 4860.929 kb on + strand, within ABIE41_RS23580 at 4860.929 kb on + strand, within ABIE41_RS23580 at 4860.929 kb on + strand, within ABIE41_RS23580 at 4860.930 kb on - strand, within ABIE41_RS23580 at 4860.930 kb on - strand, within ABIE41_RS23580
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM remove 4,858,629 + ABIE41_RS23570 0.26 +0.1 4,858,629 + ABIE41_RS23570 0.26 +1.7 4,858,802 - ABIE41_RS23570 0.43 +1.4 4,859,838 + ABIE41_RS23575 0.45 +0.8 4,859,839 - ABIE41_RS23575 0.45 -0.6 4,859,873 - ABIE41_RS23575 0.49 -3.2 4,859,918 + ABIE41_RS23575 0.53 -0.1 4,859,918 + ABIE41_RS23575 0.53 +0.6 4,859,918 + ABIE41_RS23575 0.53 -2.3 4,859,918 + ABIE41_RS23575 0.53 +1.7 4,859,918 + ABIE41_RS23575 0.53 +1.3 4,859,918 + ABIE41_RS23575 0.53 -0.9 4,859,918 + ABIE41_RS23575 0.53 +0.6 4,859,918 + ABIE41_RS23575 0.53 +1.9 4,859,919 - ABIE41_RS23575 0.53 +0.4 4,859,919 - ABIE41_RS23575 0.53 -0.4 4,859,919 - ABIE41_RS23575 0.53 -0.8 4,859,919 - ABIE41_RS23575 0.53 +0.8 4,859,919 - ABIE41_RS23575 0.53 +0.2 4,859,998 + ABIE41_RS23575 0.61 -1.4 4,859,998 + ABIE41_RS23575 0.61 +1.1 4,859,998 + ABIE41_RS23575 0.61 +0.3 4,859,998 + ABIE41_RS23575 0.61 +1.9 4,859,998 + ABIE41_RS23575 0.61 +2.5 4,859,998 + ABIE41_RS23575 0.61 +0.8 4,859,999 - ABIE41_RS23575 0.61 -1.6 4,859,999 - ABIE41_RS23575 0.61 -1.4 4,860,238 + ABIE41_RS23575 0.85 +0.4 4,860,239 - ABIE41_RS23575 0.85 +0.0 4,860,509 + +1.3 4,860,509 + +1.6 4,860,530 + +0.1 4,860,530 + +0.6 4,860,530 + +0.5 4,860,546 - +1.5 4,860,569 + +1.7 4,860,570 - -0.1 4,860,570 - -0.4 4,860,753 - ABIE41_RS23580 0.18 -0.2 4,860,753 - ABIE41_RS23580 0.18 -0.3 4,860,851 + ABIE41_RS23580 0.25 -0.6 4,860,851 + ABIE41_RS23580 0.25 +0.2 4,860,851 + ABIE41_RS23580 0.25 -1.9 4,860,852 - ABIE41_RS23580 0.25 +0.1 4,860,852 - ABIE41_RS23580 0.25 +1.2 4,860,929 + ABIE41_RS23580 0.30 +0.5 4,860,929 + ABIE41_RS23580 0.30 -0.1 4,860,929 + ABIE41_RS23580 0.30 +1.4 4,860,930 - ABIE41_RS23580 0.30 -3.1 4,860,930 - ABIE41_RS23580 0.30 -0.3
Or see this region's nucleotide sequence