Experiment: R2A with 2-pentyl-furan 21.3684 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21490 and ABIE41_RS21495 overlap by 1 nucleotides ABIE41_RS21495 and ABIE41_RS21500 overlap by 4 nucleotides ABIE41_RS21500 and ABIE41_RS21505 are separated by 13 nucleotides
ABIE41_RS21490: ABIE41_RS21490 - glycoside hydrolase/phage tail family protein, at 4,418,489 to 4,421,890
_RS21490
ABIE41_RS21495: ABIE41_RS21495 - NlpC/P60 family protein, at 4,421,890 to 4,422,333
_RS21495
ABIE41_RS21500: ABIE41_RS21500 - DUF2163 domain-containing protein, at 4,422,330 to 4,423,211
_RS21500
ABIE41_RS21505: ABIE41_RS21505 - DUF2460 domain-containing protein, at 4,423,225 to 4,423,864
_RS21505
Position (kb) 4421
4422
4423 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4420.977 kb on - strand, within ABIE41_RS21490 at 4421.017 kb on + strand, within ABIE41_RS21490 at 4421.017 kb on + strand, within ABIE41_RS21490 at 4421.017 kb on + strand, within ABIE41_RS21490 at 4421.018 kb on - strand, within ABIE41_RS21490 at 4421.134 kb on - strand, within ABIE41_RS21490 at 4421.202 kb on + strand, within ABIE41_RS21490 at 4421.343 kb on + strand, within ABIE41_RS21490 at 4421.343 kb on + strand, within ABIE41_RS21490 at 4421.344 kb on - strand, within ABIE41_RS21490 at 4421.533 kb on - strand, within ABIE41_RS21490 at 4421.535 kb on + strand, within ABIE41_RS21490 at 4421.535 kb on + strand, within ABIE41_RS21490 at 4421.535 kb on + strand, within ABIE41_RS21490 at 4421.536 kb on - strand, within ABIE41_RS21490 at 4421.536 kb on - strand, within ABIE41_RS21490 at 4421.536 kb on - strand, within ABIE41_RS21490 at 4421.536 kb on - strand, within ABIE41_RS21490 at 4421.536 kb on - strand, within ABIE41_RS21490 at 4421.536 kb on - strand, within ABIE41_RS21490 at 4421.536 kb on - strand, within ABIE41_RS21490 at 4421.536 kb on - strand, within ABIE41_RS21490 at 4421.536 kb on - strand, within ABIE41_RS21490 at 4421.536 kb on - strand, within ABIE41_RS21490 at 4421.541 kb on + strand, within ABIE41_RS21490 at 4421.541 kb on + strand, within ABIE41_RS21490 at 4421.541 kb on + strand, within ABIE41_RS21490 at 4421.542 kb on - strand, within ABIE41_RS21490 at 4421.542 kb on - strand, within ABIE41_RS21490 at 4421.542 kb on - strand, within ABIE41_RS21490 at 4421.542 kb on - strand, within ABIE41_RS21490 at 4421.542 kb on - strand, within ABIE41_RS21490 at 4421.542 kb on - strand, within ABIE41_RS21490 at 4421.670 kb on + strand at 4422.269 kb on + strand, within ABIE41_RS21495 at 4422.270 kb on - strand, within ABIE41_RS21495 at 4422.270 kb on - strand, within ABIE41_RS21495 at 4422.270 kb on - strand, within ABIE41_RS21495 at 4422.407 kb on + strand at 4422.772 kb on + strand, within ABIE41_RS21500 at 4422.772 kb on + strand, within ABIE41_RS21500 at 4422.772 kb on + strand, within ABIE41_RS21500 at 4422.773 kb on - strand, within ABIE41_RS21500 at 4422.773 kb on - strand, within ABIE41_RS21500 at 4422.773 kb on - strand, within ABIE41_RS21500 at 4422.937 kb on + strand, within ABIE41_RS21500 at 4422.937 kb on + strand, within ABIE41_RS21500 at 4422.937 kb on + strand, within ABIE41_RS21500 at 4422.937 kb on + strand, within ABIE41_RS21500 at 4422.937 kb on + strand, within ABIE41_RS21500
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM remove 4,420,977 - ABIE41_RS21490 0.73 +1.8 4,421,017 + ABIE41_RS21490 0.74 +0.3 4,421,017 + ABIE41_RS21490 0.74 +0.3 4,421,017 + ABIE41_RS21490 0.74 -3.4 4,421,018 - ABIE41_RS21490 0.74 -1.4 4,421,134 - ABIE41_RS21490 0.78 -1.5 4,421,202 + ABIE41_RS21490 0.80 -0.3 4,421,343 + ABIE41_RS21490 0.84 -0.9 4,421,343 + ABIE41_RS21490 0.84 -2.5 4,421,344 - ABIE41_RS21490 0.84 -0.1 4,421,533 - ABIE41_RS21490 0.89 -2.7 4,421,535 + ABIE41_RS21490 0.90 +2.1 4,421,535 + ABIE41_RS21490 0.90 +0.1 4,421,535 + ABIE41_RS21490 0.90 -1.0 4,421,536 - ABIE41_RS21490 0.90 +0.7 4,421,536 - ABIE41_RS21490 0.90 +1.1 4,421,536 - ABIE41_RS21490 0.90 -1.4 4,421,536 - ABIE41_RS21490 0.90 -1.5 4,421,536 - ABIE41_RS21490 0.90 -0.6 4,421,536 - ABIE41_RS21490 0.90 -0.0 4,421,536 - ABIE41_RS21490 0.90 -0.9 4,421,536 - ABIE41_RS21490 0.90 +0.5 4,421,536 - ABIE41_RS21490 0.90 +0.6 4,421,536 - ABIE41_RS21490 0.90 -0.1 4,421,541 + ABIE41_RS21490 0.90 +2.0 4,421,541 + ABIE41_RS21490 0.90 -1.1 4,421,541 + ABIE41_RS21490 0.90 -0.1 4,421,542 - ABIE41_RS21490 0.90 -2.7 4,421,542 - ABIE41_RS21490 0.90 -0.7 4,421,542 - ABIE41_RS21490 0.90 -0.1 4,421,542 - ABIE41_RS21490 0.90 -1.0 4,421,542 - ABIE41_RS21490 0.90 +0.1 4,421,542 - ABIE41_RS21490 0.90 +1.1 4,421,670 + +0.6 4,422,269 + ABIE41_RS21495 0.85 +1.0 4,422,270 - ABIE41_RS21495 0.86 -0.4 4,422,270 - ABIE41_RS21495 0.86 -1.3 4,422,270 - ABIE41_RS21495 0.86 -0.9 4,422,407 + -0.4 4,422,772 + ABIE41_RS21500 0.50 -0.7 4,422,772 + ABIE41_RS21500 0.50 +0.2 4,422,772 + ABIE41_RS21500 0.50 +1.6 4,422,773 - ABIE41_RS21500 0.50 -0.8 4,422,773 - ABIE41_RS21500 0.50 -1.2 4,422,773 - ABIE41_RS21500 0.50 +2.1 4,422,937 + ABIE41_RS21500 0.69 -2.4 4,422,937 + ABIE41_RS21500 0.69 +0.1 4,422,937 + ABIE41_RS21500 0.69 +0.2 4,422,937 + ABIE41_RS21500 0.69 -0.1 4,422,937 + ABIE41_RS21500 0.69 +0.5
Or see this region's nucleotide sequence