Experiment: R2A with 2-pentyl-furan 21.3684 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21465 and ABIE41_RS21470 are separated by 76 nucleotides ABIE41_RS21470 and ABIE41_RS21475 are separated by 9 nucleotides ABIE41_RS21475 and ABIE41_RS21480 are separated by 41 nucleotides
ABIE41_RS21465: ABIE41_RS21465 - c-type cytochrome biogenesis protein CcmI, at 4,414,329 to 4,415,429
_RS21465
ABIE41_RS21470: ABIE41_RS21470 - sensor histidine kinase, at 4,415,506 to 4,416,876
_RS21470
ABIE41_RS21475: ABIE41_RS21475 - response regulator transcription factor, at 4,416,886 to 4,417,554
_RS21475
ABIE41_RS21480: ABIE41_RS21480 - hypothetical protein, at 4,417,596 to 4,417,916
_RS21480
Position (kb) 4415
4416
4417 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4414.542 kb on - strand, within ABIE41_RS21465 at 4414.542 kb on - strand, within ABIE41_RS21465 at 4414.931 kb on + strand, within ABIE41_RS21465 at 4414.931 kb on + strand, within ABIE41_RS21465 at 4414.932 kb on - strand, within ABIE41_RS21465 at 4414.933 kb on + strand, within ABIE41_RS21465 at 4414.934 kb on - strand, within ABIE41_RS21465 at 4414.934 kb on - strand, within ABIE41_RS21465 at 4414.934 kb on - strand, within ABIE41_RS21465 at 4414.934 kb on - strand, within ABIE41_RS21465 at 4415.087 kb on - strand, within ABIE41_RS21465 at 4415.440 kb on + strand at 4415.482 kb on + strand at 4415.483 kb on - strand at 4415.483 kb on - strand at 4415.536 kb on + strand at 4415.537 kb on - strand at 4415.537 kb on - strand at 4415.537 kb on - strand at 4415.537 kb on - strand at 4415.580 kb on - strand at 4415.580 kb on - strand at 4415.580 kb on - strand at 4415.990 kb on + strand, within ABIE41_RS21470 at 4415.991 kb on - strand, within ABIE41_RS21470 at 4415.993 kb on + strand, within ABIE41_RS21470 at 4415.993 kb on + strand, within ABIE41_RS21470 at 4415.994 kb on - strand, within ABIE41_RS21470 at 4415.994 kb on - strand, within ABIE41_RS21470 at 4415.994 kb on - strand, within ABIE41_RS21470 at 4415.994 kb on - strand, within ABIE41_RS21470 at 4415.994 kb on - strand, within ABIE41_RS21470 at 4416.206 kb on + strand, within ABIE41_RS21470 at 4416.207 kb on - strand, within ABIE41_RS21470 at 4416.488 kb on + strand, within ABIE41_RS21470 at 4416.489 kb on - strand, within ABIE41_RS21470 at 4416.489 kb on - strand, within ABIE41_RS21470 at 4416.489 kb on - strand, within ABIE41_RS21470 at 4416.489 kb on - strand, within ABIE41_RS21470 at 4416.489 kb on - strand, within ABIE41_RS21470 at 4416.617 kb on + strand, within ABIE41_RS21470 at 4416.618 kb on - strand, within ABIE41_RS21470 at 4416.723 kb on - strand, within ABIE41_RS21470 at 4416.723 kb on - strand, within ABIE41_RS21470 at 4416.723 kb on - strand, within ABIE41_RS21470 at 4416.729 kb on + strand, within ABIE41_RS21470 at 4416.729 kb on + strand, within ABIE41_RS21470 at 4416.729 kb on + strand, within ABIE41_RS21470 at 4416.729 kb on + strand, within ABIE41_RS21470 at 4416.730 kb on - strand, within ABIE41_RS21470 at 4416.730 kb on - strand, within ABIE41_RS21470 at 4416.766 kb on + strand at 4416.768 kb on - strand at 4416.913 kb on - strand at 4416.914 kb on + strand at 4416.914 kb on + strand at 4416.914 kb on + strand at 4416.914 kb on + strand at 4416.914 kb on + strand at 4416.915 kb on - strand at 4416.915 kb on - strand at 4416.915 kb on - strand at 4416.915 kb on - strand at 4416.915 kb on - strand at 4416.915 kb on - strand at 4416.915 kb on - strand at 4417.071 kb on + strand, within ABIE41_RS21475 at 4417.071 kb on + strand, within ABIE41_RS21475 at 4417.071 kb on + strand, within ABIE41_RS21475 at 4417.072 kb on - strand, within ABIE41_RS21475 at 4417.072 kb on - strand, within ABIE41_RS21475 at 4417.072 kb on - strand, within ABIE41_RS21475 at 4417.076 kb on + strand, within ABIE41_RS21475 at 4417.077 kb on - strand, within ABIE41_RS21475 at 4417.077 kb on - strand, within ABIE41_RS21475 at 4417.263 kb on - strand, within ABIE41_RS21475 at 4417.421 kb on + strand, within ABIE41_RS21475 at 4417.421 kb on + strand, within ABIE41_RS21475 at 4417.422 kb on - strand, within ABIE41_RS21475 at 4417.422 kb on - strand, within ABIE41_RS21475 at 4417.422 kb on - strand, within ABIE41_RS21475 at 4417.422 kb on - strand, within ABIE41_RS21475 at 4417.443 kb on - strand, within ABIE41_RS21475 at 4417.443 kb on - strand, within ABIE41_RS21475 at 4417.681 kb on + strand, within ABIE41_RS21480 at 4417.681 kb on + strand, within ABIE41_RS21480 at 4417.687 kb on + strand, within ABIE41_RS21480 at 4417.687 kb on + strand, within ABIE41_RS21480 at 4417.687 kb on + strand, within ABIE41_RS21480 at 4417.687 kb on + strand, within ABIE41_RS21480 at 4417.687 kb on + strand, within ABIE41_RS21480 at 4417.687 kb on + strand, within ABIE41_RS21480 at 4417.687 kb on + strand, within ABIE41_RS21480 at 4417.687 kb on + strand, within ABIE41_RS21480 at 4417.687 kb on + strand, within ABIE41_RS21480 at 4417.687 kb on + strand, within ABIE41_RS21480 at 4417.687 kb on + strand, within ABIE41_RS21480 at 4417.688 kb on - strand, within ABIE41_RS21480 at 4417.688 kb on - strand, within ABIE41_RS21480 at 4417.688 kb on - strand, within ABIE41_RS21480 at 4417.688 kb on - strand, within ABIE41_RS21480 at 4417.688 kb on - strand, within ABIE41_RS21480 at 4417.688 kb on - strand, within ABIE41_RS21480 at 4417.688 kb on - strand, within ABIE41_RS21480
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM remove 4,414,542 - ABIE41_RS21465 0.19 -2.5 4,414,542 - ABIE41_RS21465 0.19 -2.1 4,414,931 + ABIE41_RS21465 0.55 -0.2 4,414,931 + ABIE41_RS21465 0.55 -4.7 4,414,932 - ABIE41_RS21465 0.55 -2.0 4,414,933 + ABIE41_RS21465 0.55 -0.7 4,414,934 - ABIE41_RS21465 0.55 -1.1 4,414,934 - ABIE41_RS21465 0.55 -4.3 4,414,934 - ABIE41_RS21465 0.55 +1.3 4,414,934 - ABIE41_RS21465 0.55 +0.1 4,415,087 - ABIE41_RS21465 0.69 -4.7 4,415,440 + -0.2 4,415,482 + +0.1 4,415,483 - +0.3 4,415,483 - +0.5 4,415,536 + -0.3 4,415,537 - +0.8 4,415,537 - +0.4 4,415,537 - -1.3 4,415,537 - +1.2 4,415,580 - +1.9 4,415,580 - +1.7 4,415,580 - -0.7 4,415,990 + ABIE41_RS21470 0.35 +0.2 4,415,991 - ABIE41_RS21470 0.35 +0.8 4,415,993 + ABIE41_RS21470 0.36 -0.1 4,415,993 + ABIE41_RS21470 0.36 -1.6 4,415,994 - ABIE41_RS21470 0.36 -0.3 4,415,994 - ABIE41_RS21470 0.36 -1.9 4,415,994 - ABIE41_RS21470 0.36 -1.4 4,415,994 - ABIE41_RS21470 0.36 +0.4 4,415,994 - ABIE41_RS21470 0.36 -1.0 4,416,206 + ABIE41_RS21470 0.51 +1.2 4,416,207 - ABIE41_RS21470 0.51 +0.5 4,416,488 + ABIE41_RS21470 0.72 -0.1 4,416,489 - ABIE41_RS21470 0.72 -0.5 4,416,489 - ABIE41_RS21470 0.72 +0.1 4,416,489 - ABIE41_RS21470 0.72 +0.5 4,416,489 - ABIE41_RS21470 0.72 +0.2 4,416,489 - ABIE41_RS21470 0.72 -0.7 4,416,617 + ABIE41_RS21470 0.81 +0.0 4,416,618 - ABIE41_RS21470 0.81 -1.9 4,416,723 - ABIE41_RS21470 0.89 +0.3 4,416,723 - ABIE41_RS21470 0.89 +1.6 4,416,723 - ABIE41_RS21470 0.89 -1.3 4,416,729 + ABIE41_RS21470 0.89 +0.3 4,416,729 + ABIE41_RS21470 0.89 +0.3 4,416,729 + ABIE41_RS21470 0.89 -0.4 4,416,729 + ABIE41_RS21470 0.89 -0.4 4,416,730 - ABIE41_RS21470 0.89 -1.5 4,416,730 - ABIE41_RS21470 0.89 -1.0 4,416,766 + +0.3 4,416,768 - +0.3 4,416,913 - +0.6 4,416,914 + -1.4 4,416,914 + -4.2 4,416,914 + +1.4 4,416,914 + +0.5 4,416,914 + -2.0 4,416,915 - +0.8 4,416,915 - +0.2 4,416,915 - +0.8 4,416,915 - +0.2 4,416,915 - +0.1 4,416,915 - -1.1 4,416,915 - +0.7 4,417,071 + ABIE41_RS21475 0.28 -0.1 4,417,071 + ABIE41_RS21475 0.28 +0.1 4,417,071 + ABIE41_RS21475 0.28 -2.2 4,417,072 - ABIE41_RS21475 0.28 -0.5 4,417,072 - ABIE41_RS21475 0.28 +1.1 4,417,072 - ABIE41_RS21475 0.28 +2.1 4,417,076 + ABIE41_RS21475 0.28 -2.6 4,417,077 - ABIE41_RS21475 0.29 +1.7 4,417,077 - ABIE41_RS21475 0.29 -3.8 4,417,263 - ABIE41_RS21475 0.56 +0.2 4,417,421 + ABIE41_RS21475 0.80 +1.9 4,417,421 + ABIE41_RS21475 0.80 -2.4 4,417,422 - ABIE41_RS21475 0.80 -0.5 4,417,422 - ABIE41_RS21475 0.80 -0.1 4,417,422 - ABIE41_RS21475 0.80 -0.6 4,417,422 - ABIE41_RS21475 0.80 +0.9 4,417,443 - ABIE41_RS21475 0.83 +2.1 4,417,443 - ABIE41_RS21475 0.83 +0.0 4,417,681 + ABIE41_RS21480 0.26 -3.5 4,417,681 + ABIE41_RS21480 0.26 -2.6 4,417,687 + ABIE41_RS21480 0.28 -2.1 4,417,687 + ABIE41_RS21480 0.28 -1.0 4,417,687 + ABIE41_RS21480 0.28 -2.4 4,417,687 + ABIE41_RS21480 0.28 -0.5 4,417,687 + ABIE41_RS21480 0.28 -3.1 4,417,687 + ABIE41_RS21480 0.28 -1.8 4,417,687 + ABIE41_RS21480 0.28 -3.8 4,417,687 + ABIE41_RS21480 0.28 -2.8 4,417,687 + ABIE41_RS21480 0.28 -0.7 4,417,687 + ABIE41_RS21480 0.28 -1.5 4,417,687 + ABIE41_RS21480 0.28 -0.1 4,417,688 - ABIE41_RS21480 0.29 -2.8 4,417,688 - ABIE41_RS21480 0.29 +0.1 4,417,688 - ABIE41_RS21480 0.29 -2.1 4,417,688 - ABIE41_RS21480 0.29 -3.1 4,417,688 - ABIE41_RS21480 0.29 -1.4 4,417,688 - ABIE41_RS21480 0.29 +1.1 4,417,688 - ABIE41_RS21480 0.29 -2.9
Or see this region's nucleotide sequence