Experiment: R2A with 2-pentyl-furan 21.3684 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS20845 and ABIE41_RS20850 are separated by 161 nucleotides ABIE41_RS20850 and ABIE41_RS20855 are separated by 124 nucleotides ABIE41_RS20855 and ABIE41_RS20860 are separated by 159 nucleotides
ABIE41_RS20845: ABIE41_RS20845 - ABC transporter ATP-binding protein/permease, at 4,284,930 to 4,286,843
_RS20845
ABIE41_RS20850: ABIE41_RS20850 - hypothetical protein, at 4,287,005 to 4,287,352
_RS20850
ABIE41_RS20855: ABIE41_RS20855 - citramalate synthase, at 4,287,477 to 4,289,075
_RS20855
ABIE41_RS20860: ABIE41_RS20860 - cysteine--tRNA ligase, at 4,289,235 to 4,290,773
_RS20860
Position (kb)
4287
4288
4289
4290 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4286.543 kb on - strand, within ABIE41_RS20845 at 4286.543 kb on - strand, within ABIE41_RS20845 at 4286.543 kb on - strand, within ABIE41_RS20845 at 4286.741 kb on - strand at 4286.874 kb on - strand at 4286.875 kb on + strand at 4286.875 kb on + strand at 4286.875 kb on + strand at 4286.875 kb on + strand at 4286.875 kb on + strand at 4286.875 kb on + strand at 4286.875 kb on + strand at 4286.876 kb on - strand at 4286.876 kb on - strand at 4286.876 kb on - strand at 4286.876 kb on - strand at 4287.001 kb on + strand at 4287.001 kb on + strand at 4287.001 kb on + strand at 4287.002 kb on - strand at 4287.002 kb on - strand at 4287.002 kb on - strand at 4287.002 kb on - strand at 4287.002 kb on - strand at 4287.124 kb on + strand, within ABIE41_RS20850 at 4287.260 kb on + strand, within ABIE41_RS20850 at 4287.260 kb on + strand, within ABIE41_RS20850 at 4287.260 kb on + strand, within ABIE41_RS20850 at 4287.260 kb on + strand, within ABIE41_RS20850 at 4287.260 kb on + strand, within ABIE41_RS20850 at 4287.260 kb on + strand, within ABIE41_RS20850 at 4287.260 kb on + strand, within ABIE41_RS20850 at 4287.470 kb on - strand at 4287.470 kb on - strand at 4287.470 kb on - strand at 4287.470 kb on - strand at 4287.470 kb on - strand at 4287.658 kb on + strand, within ABIE41_RS20855 at 4287.695 kb on - strand, within ABIE41_RS20855 at 4287.920 kb on - strand, within ABIE41_RS20855 at 4287.950 kb on - strand, within ABIE41_RS20855 at 4288.124 kb on - strand, within ABIE41_RS20855 at 4288.753 kb on + strand, within ABIE41_RS20855 at 4288.753 kb on + strand, within ABIE41_RS20855 at 4288.753 kb on + strand, within ABIE41_RS20855 at 4288.753 kb on + strand, within ABIE41_RS20855 at 4288.754 kb on - strand, within ABIE41_RS20855 at 4288.754 kb on - strand, within ABIE41_RS20855 at 4288.949 kb on - strand at 4288.949 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM remove 4,286,543 - ABIE41_RS20845 0.84 +0.4 4,286,543 - ABIE41_RS20845 0.84 +0.1 4,286,543 - ABIE41_RS20845 0.84 +0.2 4,286,741 - -0.6 4,286,874 - -0.4 4,286,875 + -0.3 4,286,875 + +0.5 4,286,875 + +1.1 4,286,875 + +1.2 4,286,875 + +1.1 4,286,875 + +0.3 4,286,875 + -1.3 4,286,876 - -1.5 4,286,876 - +0.9 4,286,876 - +0.7 4,286,876 - -2.4 4,287,001 + +1.0 4,287,001 + -1.5 4,287,001 + -0.0 4,287,002 - -0.5 4,287,002 - +0.1 4,287,002 - -2.8 4,287,002 - -2.7 4,287,002 - +0.1 4,287,124 + ABIE41_RS20850 0.34 -2.4 4,287,260 + ABIE41_RS20850 0.73 -1.2 4,287,260 + ABIE41_RS20850 0.73 +1.3 4,287,260 + ABIE41_RS20850 0.73 +0.6 4,287,260 + ABIE41_RS20850 0.73 +0.0 4,287,260 + ABIE41_RS20850 0.73 +0.1 4,287,260 + ABIE41_RS20850 0.73 +0.8 4,287,260 + ABIE41_RS20850 0.73 -0.1 4,287,470 - -1.3 4,287,470 - +0.0 4,287,470 - +2.8 4,287,470 - -1.6 4,287,470 - -1.7 4,287,658 + ABIE41_RS20855 0.11 -0.3 4,287,695 - ABIE41_RS20855 0.14 +1.5 4,287,920 - ABIE41_RS20855 0.28 -0.5 4,287,950 - ABIE41_RS20855 0.30 -0.9 4,288,124 - ABIE41_RS20855 0.40 +2.1 4,288,753 + ABIE41_RS20855 0.80 +0.4 4,288,753 + ABIE41_RS20855 0.80 +0.3 4,288,753 + ABIE41_RS20855 0.80 +1.8 4,288,753 + ABIE41_RS20855 0.80 -2.5 4,288,754 - ABIE41_RS20855 0.80 +1.5 4,288,754 - ABIE41_RS20855 0.80 -1.5 4,288,949 - -0.1 4,288,949 - -1.3
Or see this region's nucleotide sequence