Experiment: R2A with 2-pentyl-furan 21.3684 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS20835 and ABIE41_RS20840 are separated by 6 nucleotides ABIE41_RS20840 and ABIE41_RS20845 are separated by 91 nucleotides ABIE41_RS20845 and ABIE41_RS20850 are separated by 161 nucleotides ABIE41_RS20850 and ABIE41_RS20855 are separated by 124 nucleotides
ABIE41_RS20835: ABIE41_RS20835 - cytochrome P450, at 4,282,979 to 4,284,343
_RS20835
ABIE41_RS20840: ABIE41_RS20840 - hypothetical protein, at 4,284,350 to 4,284,838
_RS20840
ABIE41_RS20845: ABIE41_RS20845 - ABC transporter ATP-binding protein/permease, at 4,284,930 to 4,286,843
_RS20845
ABIE41_RS20850: ABIE41_RS20850 - hypothetical protein, at 4,287,005 to 4,287,352
_RS20850
ABIE41_RS20855: ABIE41_RS20855 - citramalate synthase, at 4,287,477 to 4,289,075
_RS20855
Position (kb) 4284
4285
4286
4287 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4283.958 kb on - strand, within ABIE41_RS20835 at 4283.958 kb on - strand, within ABIE41_RS20835 at 4284.041 kb on + strand, within ABIE41_RS20835 at 4284.041 kb on + strand, within ABIE41_RS20835 at 4284.041 kb on + strand, within ABIE41_RS20835 at 4284.042 kb on - strand, within ABIE41_RS20835 at 4284.042 kb on - strand, within ABIE41_RS20835 at 4284.042 kb on - strand, within ABIE41_RS20835 at 4284.078 kb on + strand, within ABIE41_RS20835 at 4284.079 kb on - strand, within ABIE41_RS20835 at 4284.079 kb on - strand, within ABIE41_RS20835 at 4284.079 kb on - strand, within ABIE41_RS20835 at 4284.147 kb on - strand, within ABIE41_RS20835 at 4284.147 kb on - strand, within ABIE41_RS20835 at 4284.152 kb on + strand, within ABIE41_RS20835 at 4284.153 kb on - strand, within ABIE41_RS20835 at 4284.153 kb on - strand, within ABIE41_RS20835 at 4284.153 kb on - strand, within ABIE41_RS20835 at 4284.153 kb on - strand, within ABIE41_RS20835 at 4284.367 kb on - strand at 4284.528 kb on + strand, within ABIE41_RS20840 at 4284.528 kb on + strand, within ABIE41_RS20840 at 4284.529 kb on - strand, within ABIE41_RS20840 at 4284.529 kb on - strand, within ABIE41_RS20840 at 4284.547 kb on + strand, within ABIE41_RS20840 at 4284.555 kb on + strand, within ABIE41_RS20840 at 4284.556 kb on - strand, within ABIE41_RS20840 at 4284.556 kb on - strand, within ABIE41_RS20840 at 4284.556 kb on - strand, within ABIE41_RS20840 at 4284.556 kb on - strand, within ABIE41_RS20840 at 4285.036 kb on + strand at 4285.036 kb on + strand at 4285.037 kb on - strand at 4285.037 kb on - strand at 4285.343 kb on - strand, within ABIE41_RS20845 at 4285.444 kb on + strand, within ABIE41_RS20845 at 4285.473 kb on - strand, within ABIE41_RS20845 at 4285.570 kb on + strand, within ABIE41_RS20845 at 4285.571 kb on - strand, within ABIE41_RS20845 at 4285.571 kb on - strand, within ABIE41_RS20845 at 4285.571 kb on - strand, within ABIE41_RS20845 at 4285.691 kb on + strand, within ABIE41_RS20845 at 4285.692 kb on - strand, within ABIE41_RS20845 at 4285.693 kb on + strand, within ABIE41_RS20845 at 4285.693 kb on + strand, within ABIE41_RS20845 at 4285.693 kb on + strand, within ABIE41_RS20845 at 4285.693 kb on + strand, within ABIE41_RS20845 at 4285.693 kb on + strand, within ABIE41_RS20845 at 4285.693 kb on + strand, within ABIE41_RS20845 at 4285.693 kb on + strand, within ABIE41_RS20845 at 4285.693 kb on + strand, within ABIE41_RS20845 at 4285.693 kb on + strand, within ABIE41_RS20845 at 4285.693 kb on + strand, within ABIE41_RS20845 at 4285.694 kb on - strand, within ABIE41_RS20845 at 4285.694 kb on - strand, within ABIE41_RS20845 at 4285.694 kb on - strand, within ABIE41_RS20845 at 4285.694 kb on - strand, within ABIE41_RS20845 at 4285.694 kb on - strand, within ABIE41_RS20845 at 4285.694 kb on - strand, within ABIE41_RS20845 at 4285.867 kb on + strand, within ABIE41_RS20845 at 4286.017 kb on + strand, within ABIE41_RS20845 at 4286.017 kb on + strand, within ABIE41_RS20845 at 4286.017 kb on + strand, within ABIE41_RS20845 at 4286.017 kb on + strand, within ABIE41_RS20845 at 4286.017 kb on + strand, within ABIE41_RS20845 at 4286.017 kb on + strand, within ABIE41_RS20845 at 4286.063 kb on - strand, within ABIE41_RS20845 at 4286.095 kb on + strand, within ABIE41_RS20845 at 4286.095 kb on + strand, within ABIE41_RS20845 at 4286.095 kb on + strand, within ABIE41_RS20845 at 4286.096 kb on - strand, within ABIE41_RS20845 at 4286.096 kb on - strand, within ABIE41_RS20845 at 4286.110 kb on + strand, within ABIE41_RS20845 at 4286.111 kb on - strand, within ABIE41_RS20845 at 4286.209 kb on + strand, within ABIE41_RS20845 at 4286.209 kb on + strand, within ABIE41_RS20845 at 4286.218 kb on + strand, within ABIE41_RS20845 at 4286.218 kb on + strand, within ABIE41_RS20845 at 4286.218 kb on + strand, within ABIE41_RS20845 at 4286.219 kb on - strand, within ABIE41_RS20845 at 4286.219 kb on - strand, within ABIE41_RS20845 at 4286.252 kb on - strand, within ABIE41_RS20845 at 4286.543 kb on - strand, within ABIE41_RS20845 at 4286.543 kb on - strand, within ABIE41_RS20845 at 4286.543 kb on - strand, within ABIE41_RS20845 at 4286.741 kb on - strand at 4286.874 kb on - strand at 4286.875 kb on + strand at 4286.875 kb on + strand at 4286.875 kb on + strand at 4286.875 kb on + strand at 4286.875 kb on + strand at 4286.875 kb on + strand at 4286.875 kb on + strand at 4286.876 kb on - strand at 4286.876 kb on - strand at 4286.876 kb on - strand at 4286.876 kb on - strand at 4287.001 kb on + strand at 4287.001 kb on + strand at 4287.001 kb on + strand at 4287.002 kb on - strand at 4287.002 kb on - strand at 4287.002 kb on - strand at 4287.002 kb on - strand at 4287.002 kb on - strand at 4287.124 kb on + strand, within ABIE41_RS20850 at 4287.260 kb on + strand, within ABIE41_RS20850 at 4287.260 kb on + strand, within ABIE41_RS20850 at 4287.260 kb on + strand, within ABIE41_RS20850 at 4287.260 kb on + strand, within ABIE41_RS20850 at 4287.260 kb on + strand, within ABIE41_RS20850 at 4287.260 kb on + strand, within ABIE41_RS20850 at 4287.260 kb on + strand, within ABIE41_RS20850 at 4287.470 kb on - strand at 4287.470 kb on - strand at 4287.470 kb on - strand at 4287.470 kb on - strand at 4287.470 kb on - strand at 4287.658 kb on + strand, within ABIE41_RS20855 at 4287.695 kb on - strand, within ABIE41_RS20855
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM remove 4,283,958 - ABIE41_RS20835 0.72 +1.7 4,283,958 - ABIE41_RS20835 0.72 +1.2 4,284,041 + ABIE41_RS20835 0.78 +0.2 4,284,041 + ABIE41_RS20835 0.78 +2.4 4,284,041 + ABIE41_RS20835 0.78 -0.5 4,284,042 - ABIE41_RS20835 0.78 +0.9 4,284,042 - ABIE41_RS20835 0.78 +0.4 4,284,042 - ABIE41_RS20835 0.78 +1.1 4,284,078 + ABIE41_RS20835 0.81 +1.8 4,284,079 - ABIE41_RS20835 0.81 +0.3 4,284,079 - ABIE41_RS20835 0.81 -1.5 4,284,079 - ABIE41_RS20835 0.81 -0.3 4,284,147 - ABIE41_RS20835 0.86 -2.0 4,284,147 - ABIE41_RS20835 0.86 -1.4 4,284,152 + ABIE41_RS20835 0.86 +2.1 4,284,153 - ABIE41_RS20835 0.86 +0.4 4,284,153 - ABIE41_RS20835 0.86 +2.4 4,284,153 - ABIE41_RS20835 0.86 -1.7 4,284,153 - ABIE41_RS20835 0.86 +0.5 4,284,367 - +0.8 4,284,528 + ABIE41_RS20840 0.36 +0.9 4,284,528 + ABIE41_RS20840 0.36 +1.5 4,284,529 - ABIE41_RS20840 0.37 +0.8 4,284,529 - ABIE41_RS20840 0.37 +1.2 4,284,547 + ABIE41_RS20840 0.40 +1.7 4,284,555 + ABIE41_RS20840 0.42 +1.1 4,284,556 - ABIE41_RS20840 0.42 +0.1 4,284,556 - ABIE41_RS20840 0.42 -1.6 4,284,556 - ABIE41_RS20840 0.42 -2.2 4,284,556 - ABIE41_RS20840 0.42 +0.5 4,285,036 + -3.6 4,285,036 + +1.3 4,285,037 - +0.2 4,285,037 - +0.8 4,285,343 - ABIE41_RS20845 0.22 -0.6 4,285,444 + ABIE41_RS20845 0.27 -0.9 4,285,473 - ABIE41_RS20845 0.28 +0.3 4,285,570 + ABIE41_RS20845 0.33 -2.4 4,285,571 - ABIE41_RS20845 0.33 +0.2 4,285,571 - ABIE41_RS20845 0.33 -1.1 4,285,571 - ABIE41_RS20845 0.33 +1.8 4,285,691 + ABIE41_RS20845 0.40 -0.4 4,285,692 - ABIE41_RS20845 0.40 +0.7 4,285,693 + ABIE41_RS20845 0.40 -0.7 4,285,693 + ABIE41_RS20845 0.40 +1.1 4,285,693 + ABIE41_RS20845 0.40 -0.6 4,285,693 + ABIE41_RS20845 0.40 +1.1 4,285,693 + ABIE41_RS20845 0.40 -1.9 4,285,693 + ABIE41_RS20845 0.40 -3.2 4,285,693 + ABIE41_RS20845 0.40 -0.4 4,285,693 + ABIE41_RS20845 0.40 -0.6 4,285,693 + ABIE41_RS20845 0.40 -1.5 4,285,693 + ABIE41_RS20845 0.40 +0.9 4,285,694 - ABIE41_RS20845 0.40 -0.7 4,285,694 - ABIE41_RS20845 0.40 +1.8 4,285,694 - ABIE41_RS20845 0.40 +0.4 4,285,694 - ABIE41_RS20845 0.40 +1.3 4,285,694 - ABIE41_RS20845 0.40 +1.1 4,285,694 - ABIE41_RS20845 0.40 -0.4 4,285,867 + ABIE41_RS20845 0.49 -0.2 4,286,017 + ABIE41_RS20845 0.57 +0.9 4,286,017 + ABIE41_RS20845 0.57 -1.9 4,286,017 + ABIE41_RS20845 0.57 -1.3 4,286,017 + ABIE41_RS20845 0.57 -1.1 4,286,017 + ABIE41_RS20845 0.57 +0.7 4,286,017 + ABIE41_RS20845 0.57 +1.0 4,286,063 - ABIE41_RS20845 0.59 +0.4 4,286,095 + ABIE41_RS20845 0.61 -2.2 4,286,095 + ABIE41_RS20845 0.61 +2.1 4,286,095 + ABIE41_RS20845 0.61 -0.3 4,286,096 - ABIE41_RS20845 0.61 +0.1 4,286,096 - ABIE41_RS20845 0.61 +1.9 4,286,110 + ABIE41_RS20845 0.62 -1.6 4,286,111 - ABIE41_RS20845 0.62 -1.0 4,286,209 + ABIE41_RS20845 0.67 -2.2 4,286,209 + ABIE41_RS20845 0.67 -0.3 4,286,218 + ABIE41_RS20845 0.67 +0.2 4,286,218 + ABIE41_RS20845 0.67 +0.8 4,286,218 + ABIE41_RS20845 0.67 -1.2 4,286,219 - ABIE41_RS20845 0.67 +1.1 4,286,219 - ABIE41_RS20845 0.67 -3.2 4,286,252 - ABIE41_RS20845 0.69 -2.3 4,286,543 - ABIE41_RS20845 0.84 +0.4 4,286,543 - ABIE41_RS20845 0.84 +0.1 4,286,543 - ABIE41_RS20845 0.84 +0.2 4,286,741 - -0.6 4,286,874 - -0.4 4,286,875 + -0.3 4,286,875 + +0.5 4,286,875 + +1.1 4,286,875 + +1.2 4,286,875 + +1.1 4,286,875 + +0.3 4,286,875 + -1.3 4,286,876 - -1.5 4,286,876 - +0.9 4,286,876 - +0.7 4,286,876 - -2.4 4,287,001 + +1.0 4,287,001 + -1.5 4,287,001 + -0.0 4,287,002 - -0.5 4,287,002 - +0.1 4,287,002 - -2.8 4,287,002 - -2.7 4,287,002 - +0.1 4,287,124 + ABIE41_RS20850 0.34 -2.4 4,287,260 + ABIE41_RS20850 0.73 -1.2 4,287,260 + ABIE41_RS20850 0.73 +1.3 4,287,260 + ABIE41_RS20850 0.73 +0.6 4,287,260 + ABIE41_RS20850 0.73 +0.0 4,287,260 + ABIE41_RS20850 0.73 +0.1 4,287,260 + ABIE41_RS20850 0.73 +0.8 4,287,260 + ABIE41_RS20850 0.73 -0.1 4,287,470 - -1.3 4,287,470 - +0.0 4,287,470 - +2.8 4,287,470 - -1.6 4,287,470 - -1.7 4,287,658 + ABIE41_RS20855 0.11 -0.3 4,287,695 - ABIE41_RS20855 0.14 +1.5
Or see this region's nucleotide sequence