Experiment: R2A with 2-pentyl-furan 21.3684 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS20325 and ABIE41_RS20330 are separated by 39 nucleotides ABIE41_RS20330 and ABIE41_RS20335 are separated by 43 nucleotides ABIE41_RS20335 and ABIE41_RS20340 are separated by 254 nucleotides
ABIE41_RS20325: ABIE41_RS20325 - patatin-like phospholipase family protein, at 4,175,516 to 4,176,685
_RS20325
ABIE41_RS20330: ABIE41_RS20330 - hypothetical protein, at 4,176,725 to 4,177,360
_RS20330
ABIE41_RS20335: ABIE41_RS20335 - tetratricopeptide repeat protein, at 4,177,404 to 4,178,720
_RS20335
ABIE41_RS20340: ABIE41_RS20340 - AraC family transcriptional regulator, at 4,178,975 to 4,179,883
_RS20340
Position (kb) 4177
4178
4179 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4176.586 kb on - strand at 4176.586 kb on - strand at 4176.601 kb on - strand at 4176.783 kb on + strand at 4176.808 kb on + strand, within ABIE41_RS20330 at 4176.809 kb on - strand, within ABIE41_RS20330 at 4176.809 kb on - strand, within ABIE41_RS20330 at 4176.809 kb on - strand, within ABIE41_RS20330 at 4176.809 kb on - strand, within ABIE41_RS20330 at 4176.809 kb on - strand, within ABIE41_RS20330 at 4176.810 kb on + strand, within ABIE41_RS20330 at 4176.810 kb on + strand, within ABIE41_RS20330 at 4176.810 kb on + strand, within ABIE41_RS20330 at 4176.810 kb on + strand, within ABIE41_RS20330 at 4176.810 kb on + strand, within ABIE41_RS20330 at 4176.810 kb on + strand, within ABIE41_RS20330 at 4176.811 kb on - strand, within ABIE41_RS20330 at 4176.811 kb on - strand, within ABIE41_RS20330 at 4176.811 kb on - strand, within ABIE41_RS20330 at 4176.811 kb on - strand, within ABIE41_RS20330 at 4176.811 kb on - strand, within ABIE41_RS20330 at 4176.840 kb on + strand, within ABIE41_RS20330 at 4176.840 kb on + strand, within ABIE41_RS20330 at 4176.840 kb on + strand, within ABIE41_RS20330 at 4176.840 kb on + strand, within ABIE41_RS20330 at 4176.841 kb on - strand, within ABIE41_RS20330 at 4176.841 kb on - strand, within ABIE41_RS20330 at 4177.104 kb on + strand, within ABIE41_RS20330 at 4177.105 kb on - strand, within ABIE41_RS20330 at 4177.105 kb on - strand, within ABIE41_RS20330 at 4177.105 kb on - strand, within ABIE41_RS20330 at 4177.105 kb on - strand, within ABIE41_RS20330 at 4177.105 kb on - strand, within ABIE41_RS20330 at 4177.161 kb on + strand, within ABIE41_RS20330 at 4177.162 kb on - strand, within ABIE41_RS20330 at 4177.464 kb on + strand at 4177.465 kb on - strand at 4177.507 kb on + strand at 4177.948 kb on + strand, within ABIE41_RS20335 at 4177.948 kb on + strand, within ABIE41_RS20335 at 4177.949 kb on - strand, within ABIE41_RS20335 at 4177.949 kb on - strand, within ABIE41_RS20335 at 4177.949 kb on - strand, within ABIE41_RS20335 at 4178.230 kb on + strand, within ABIE41_RS20335 at 4178.231 kb on - strand, within ABIE41_RS20335 at 4178.231 kb on - strand, within ABIE41_RS20335 at 4178.231 kb on - strand, within ABIE41_RS20335 at 4178.236 kb on + strand, within ABIE41_RS20335 at 4178.365 kb on + strand, within ABIE41_RS20335 at 4179.032 kb on + strand at 4179.032 kb on + strand at 4179.032 kb on + strand at 4179.032 kb on + strand at 4179.032 kb on + strand at 4179.032 kb on + strand at 4179.033 kb on - strand at 4179.033 kb on - strand at 4179.048 kb on - strand at 4179.396 kb on - strand, within ABIE41_RS20340 at 4179.406 kb on + strand, within ABIE41_RS20340 at 4179.406 kb on + strand, within ABIE41_RS20340 at 4179.407 kb on - strand, within ABIE41_RS20340 at 4179.407 kb on - strand, within ABIE41_RS20340 at 4179.407 kb on - strand, within ABIE41_RS20340 at 4179.407 kb on - strand, within ABIE41_RS20340 at 4179.407 kb on - strand, within ABIE41_RS20340 at 4179.551 kb on + strand, within ABIE41_RS20340 at 4179.552 kb on - strand, within ABIE41_RS20340 at 4179.584 kb on + strand, within ABIE41_RS20340 at 4179.585 kb on - strand, within ABIE41_RS20340 at 4179.704 kb on + strand, within ABIE41_RS20340 at 4179.704 kb on + strand, within ABIE41_RS20340 at 4179.705 kb on - strand, within ABIE41_RS20340 at 4179.705 kb on - strand, within ABIE41_RS20340 at 4179.705 kb on - strand, within ABIE41_RS20340 at 4179.705 kb on - strand, within ABIE41_RS20340
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM remove 4,176,586 - +1.9 4,176,586 - -2.7 4,176,601 - +0.1 4,176,783 + +0.8 4,176,808 + ABIE41_RS20330 0.13 -0.3 4,176,809 - ABIE41_RS20330 0.13 +2.0 4,176,809 - ABIE41_RS20330 0.13 +2.4 4,176,809 - ABIE41_RS20330 0.13 -0.1 4,176,809 - ABIE41_RS20330 0.13 +1.3 4,176,809 - ABIE41_RS20330 0.13 +0.0 4,176,810 + ABIE41_RS20330 0.13 +0.7 4,176,810 + ABIE41_RS20330 0.13 +3.6 4,176,810 + ABIE41_RS20330 0.13 +0.8 4,176,810 + ABIE41_RS20330 0.13 -1.4 4,176,810 + ABIE41_RS20330 0.13 -0.4 4,176,810 + ABIE41_RS20330 0.13 -1.0 4,176,811 - ABIE41_RS20330 0.14 -0.2 4,176,811 - ABIE41_RS20330 0.14 +1.0 4,176,811 - ABIE41_RS20330 0.14 -2.5 4,176,811 - ABIE41_RS20330 0.14 -0.1 4,176,811 - ABIE41_RS20330 0.14 -0.4 4,176,840 + ABIE41_RS20330 0.18 +0.1 4,176,840 + ABIE41_RS20330 0.18 +0.1 4,176,840 + ABIE41_RS20330 0.18 +1.0 4,176,840 + ABIE41_RS20330 0.18 -0.4 4,176,841 - ABIE41_RS20330 0.18 +0.6 4,176,841 - ABIE41_RS20330 0.18 +0.4 4,177,104 + ABIE41_RS20330 0.60 +0.0 4,177,105 - ABIE41_RS20330 0.60 +3.0 4,177,105 - ABIE41_RS20330 0.60 -1.7 4,177,105 - ABIE41_RS20330 0.60 -1.9 4,177,105 - ABIE41_RS20330 0.60 +0.2 4,177,105 - ABIE41_RS20330 0.60 -0.4 4,177,161 + ABIE41_RS20330 0.69 +0.9 4,177,162 - ABIE41_RS20330 0.69 -3.2 4,177,464 + +1.0 4,177,465 - -1.7 4,177,507 + -0.2 4,177,948 + ABIE41_RS20335 0.41 +0.5 4,177,948 + ABIE41_RS20335 0.41 -0.3 4,177,949 - ABIE41_RS20335 0.41 +0.3 4,177,949 - ABIE41_RS20335 0.41 +0.8 4,177,949 - ABIE41_RS20335 0.41 -2.9 4,178,230 + ABIE41_RS20335 0.63 -1.8 4,178,231 - ABIE41_RS20335 0.63 -0.2 4,178,231 - ABIE41_RS20335 0.63 -1.5 4,178,231 - ABIE41_RS20335 0.63 +0.2 4,178,236 + ABIE41_RS20335 0.63 +0.1 4,178,365 + ABIE41_RS20335 0.73 +1.0 4,179,032 + -0.5 4,179,032 + +0.0 4,179,032 + -2.5 4,179,032 + +3.0 4,179,032 + -2.1 4,179,032 + -0.7 4,179,033 - +1.2 4,179,033 - +0.3 4,179,048 - +0.5 4,179,396 - ABIE41_RS20340 0.46 +0.1 4,179,406 + ABIE41_RS20340 0.47 +2.0 4,179,406 + ABIE41_RS20340 0.47 +3.5 4,179,407 - ABIE41_RS20340 0.48 +0.7 4,179,407 - ABIE41_RS20340 0.48 +0.4 4,179,407 - ABIE41_RS20340 0.48 -0.5 4,179,407 - ABIE41_RS20340 0.48 -3.7 4,179,407 - ABIE41_RS20340 0.48 -2.5 4,179,551 + ABIE41_RS20340 0.63 -1.8 4,179,552 - ABIE41_RS20340 0.63 -2.9 4,179,584 + ABIE41_RS20340 0.67 +0.2 4,179,585 - ABIE41_RS20340 0.67 -2.9 4,179,704 + ABIE41_RS20340 0.80 -0.1 4,179,704 + ABIE41_RS20340 0.80 -0.5 4,179,705 - ABIE41_RS20340 0.80 +0.5 4,179,705 - ABIE41_RS20340 0.80 -0.8 4,179,705 - ABIE41_RS20340 0.80 -0.1 4,179,705 - ABIE41_RS20340 0.80 -0.4
Or see this region's nucleotide sequence