Experiment: R2A with 2-pentyl-furan 21.3684 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS20270 and ABIE41_RS20275 are separated by 59 nucleotides ABIE41_RS20275 and ABIE41_RS20280 are separated by 117 nucleotides ABIE41_RS20280 and ABIE41_RS20285 are separated by 526 nucleotides
ABIE41_RS20270: ABIE41_RS20270 - peroxiredoxin-like family protein, at 4,166,441 to 4,167,157
_RS20270
ABIE41_RS20275: ABIE41_RS20275 - carboxymuconolactone decarboxylase family protein, at 4,167,217 to 4,167,789
_RS20275
ABIE41_RS20280: ABIE41_RS20280 - LysR family transcriptional regulator, at 4,167,907 to 4,168,842
_RS20280
ABIE41_RS20285: ABIE41_RS20285 - ABC transporter ATP-binding protein, at 4,169,369 to 4,170,118
_RS20285
Position (kb) 4167
4168
4169 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4166.907 kb on + strand, within ABIE41_RS20270 at 4166.908 kb on - strand, within ABIE41_RS20270 at 4167.305 kb on + strand, within ABIE41_RS20275 at 4167.306 kb on - strand, within ABIE41_RS20275 at 4167.554 kb on + strand, within ABIE41_RS20275 at 4167.555 kb on - strand, within ABIE41_RS20275 at 4167.555 kb on - strand, within ABIE41_RS20275 at 4167.650 kb on + strand, within ABIE41_RS20275 at 4167.650 kb on + strand, within ABIE41_RS20275 at 4167.651 kb on - strand, within ABIE41_RS20275 at 4167.651 kb on - strand, within ABIE41_RS20275 at 4167.651 kb on - strand, within ABIE41_RS20275 at 4167.651 kb on - strand, within ABIE41_RS20275 at 4167.651 kb on - strand, within ABIE41_RS20275 at 4167.651 kb on - strand, within ABIE41_RS20275 at 4167.770 kb on + strand at 4167.770 kb on + strand at 4167.771 kb on - strand at 4167.896 kb on - strand at 4167.896 kb on - strand at 4167.896 kb on - strand at 4167.902 kb on + strand at 4168.420 kb on + strand, within ABIE41_RS20280 at 4168.420 kb on + strand, within ABIE41_RS20280 at 4168.420 kb on + strand, within ABIE41_RS20280 at 4168.420 kb on + strand, within ABIE41_RS20280 at 4168.421 kb on - strand, within ABIE41_RS20280 at 4168.421 kb on - strand, within ABIE41_RS20280 at 4168.421 kb on - strand, within ABIE41_RS20280 at 4168.484 kb on - strand, within ABIE41_RS20280 at 4168.811 kb on - strand at 4168.811 kb on - strand at 4169.002 kb on - strand at 4169.080 kb on - strand at 4169.080 kb on - strand at 4169.080 kb on - strand at 4169.175 kb on + strand at 4169.314 kb on - strand at 4169.340 kb on + strand at 4169.472 kb on - strand, within ABIE41_RS20285 at 4169.472 kb on - strand, within ABIE41_RS20285 at 4169.472 kb on - strand, within ABIE41_RS20285 at 4169.639 kb on + strand, within ABIE41_RS20285 at 4169.639 kb on + strand, within ABIE41_RS20285 at 4169.639 kb on + strand, within ABIE41_RS20285 at 4169.639 kb on + strand, within ABIE41_RS20285 at 4169.639 kb on + strand, within ABIE41_RS20285 at 4169.640 kb on - strand, within ABIE41_RS20285 at 4169.640 kb on - strand, within ABIE41_RS20285 at 4169.640 kb on - strand, within ABIE41_RS20285 at 4169.640 kb on - strand, within ABIE41_RS20285 at 4169.664 kb on - strand, within ABIE41_RS20285
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM remove 4,166,907 + ABIE41_RS20270 0.65 +1.4 4,166,908 - ABIE41_RS20270 0.65 -0.6 4,167,305 + ABIE41_RS20275 0.15 -0.5 4,167,306 - ABIE41_RS20275 0.16 -1.8 4,167,554 + ABIE41_RS20275 0.59 +2.5 4,167,555 - ABIE41_RS20275 0.59 -2.5 4,167,555 - ABIE41_RS20275 0.59 -0.1 4,167,650 + ABIE41_RS20275 0.76 -0.5 4,167,650 + ABIE41_RS20275 0.76 +0.6 4,167,651 - ABIE41_RS20275 0.76 +2.0 4,167,651 - ABIE41_RS20275 0.76 -1.7 4,167,651 - ABIE41_RS20275 0.76 -1.1 4,167,651 - ABIE41_RS20275 0.76 -0.8 4,167,651 - ABIE41_RS20275 0.76 +0.6 4,167,651 - ABIE41_RS20275 0.76 +0.8 4,167,770 + -0.2 4,167,770 + +0.5 4,167,771 - +0.2 4,167,896 - -1.1 4,167,896 - -1.7 4,167,896 - +0.4 4,167,902 + +3.6 4,168,420 + ABIE41_RS20280 0.55 +0.0 4,168,420 + ABIE41_RS20280 0.55 -0.9 4,168,420 + ABIE41_RS20280 0.55 -1.7 4,168,420 + ABIE41_RS20280 0.55 -0.4 4,168,421 - ABIE41_RS20280 0.55 -1.4 4,168,421 - ABIE41_RS20280 0.55 -0.4 4,168,421 - ABIE41_RS20280 0.55 +1.4 4,168,484 - ABIE41_RS20280 0.62 -0.5 4,168,811 - +0.0 4,168,811 - +2.0 4,169,002 - -3.1 4,169,080 - +0.4 4,169,080 - -0.8 4,169,080 - +0.2 4,169,175 + +0.7 4,169,314 - -0.6 4,169,340 + +0.1 4,169,472 - ABIE41_RS20285 0.14 +1.0 4,169,472 - ABIE41_RS20285 0.14 -3.4 4,169,472 - ABIE41_RS20285 0.14 -0.5 4,169,639 + ABIE41_RS20285 0.36 -3.3 4,169,639 + ABIE41_RS20285 0.36 -3.2 4,169,639 + ABIE41_RS20285 0.36 +0.0 4,169,639 + ABIE41_RS20285 0.36 +0.0 4,169,639 + ABIE41_RS20285 0.36 -0.3 4,169,640 - ABIE41_RS20285 0.36 +0.1 4,169,640 - ABIE41_RS20285 0.36 -3.5 4,169,640 - ABIE41_RS20285 0.36 -0.3 4,169,640 - ABIE41_RS20285 0.36 +0.5 4,169,664 - ABIE41_RS20285 0.39 +1.0
Or see this region's nucleotide sequence