Experiment: R2A with 2-pentyl-furan 21.3684 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS18075 and ABIE41_RS18080 are separated by 26 nucleotides ABIE41_RS18080 and ABIE41_RS18085 are separated by 15 nucleotides ABIE41_RS18085 and ABIE41_RS18090 are separated by 6 nucleotides
ABIE41_RS18075: ABIE41_RS18075 - multicopper oxidase family protein, at 3,724,185 to 3,725,621
_RS18075
ABIE41_RS18080: ABIE41_RS18080 - DoxX family protein, at 3,725,648 to 3,726,022
_RS18080
ABIE41_RS18085: ABIE41_RS18085 - gluconokinase, at 3,726,038 to 3,726,565
_RS18085
ABIE41_RS18090: ABIE41_RS18090 - phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating), at 3,726,572 to 3,727,558
_RS18090
Position (kb)
3726
3727 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3725.369 kb on + strand, within ABIE41_RS18075 at 3725.478 kb on + strand at 3725.479 kb on - strand at 3725.479 kb on - strand at 3725.672 kb on + strand at 3725.760 kb on + strand, within ABIE41_RS18080 at 3725.761 kb on - strand, within ABIE41_RS18080 at 3725.761 kb on - strand, within ABIE41_RS18080 at 3725.761 kb on - strand, within ABIE41_RS18080 at 3725.849 kb on + strand, within ABIE41_RS18080 at 3725.849 kb on + strand, within ABIE41_RS18080 at 3725.931 kb on - strand, within ABIE41_RS18080 at 3725.931 kb on - strand, within ABIE41_RS18080 at 3726.235 kb on - strand, within ABIE41_RS18085 at 3726.235 kb on - strand, within ABIE41_RS18085 at 3726.318 kb on + strand, within ABIE41_RS18085 at 3726.772 kb on - strand, within ABIE41_RS18090 at 3726.891 kb on + strand, within ABIE41_RS18090 at 3726.970 kb on - strand, within ABIE41_RS18090 at 3727.032 kb on + strand, within ABIE41_RS18090 at 3727.032 kb on + strand, within ABIE41_RS18090 at 3727.033 kb on - strand, within ABIE41_RS18090 at 3727.215 kb on + strand, within ABIE41_RS18090 at 3727.216 kb on - strand, within ABIE41_RS18090 at 3727.216 kb on - strand, within ABIE41_RS18090 at 3727.216 kb on - strand, within ABIE41_RS18090 at 3727.216 kb on - strand, within ABIE41_RS18090
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM remove 3,725,369 + ABIE41_RS18075 0.82 +0.5 3,725,478 + +0.1 3,725,479 - +0.7 3,725,479 - +0.1 3,725,672 + +0.4 3,725,760 + ABIE41_RS18080 0.30 +2.1 3,725,761 - ABIE41_RS18080 0.30 +0.1 3,725,761 - ABIE41_RS18080 0.30 +0.4 3,725,761 - ABIE41_RS18080 0.30 -0.1 3,725,849 + ABIE41_RS18080 0.54 +0.4 3,725,849 + ABIE41_RS18080 0.54 -1.9 3,725,931 - ABIE41_RS18080 0.75 +0.1 3,725,931 - ABIE41_RS18080 0.75 -1.7 3,726,235 - ABIE41_RS18085 0.37 +0.9 3,726,235 - ABIE41_RS18085 0.37 -0.1 3,726,318 + ABIE41_RS18085 0.53 +1.9 3,726,772 - ABIE41_RS18090 0.20 -0.7 3,726,891 + ABIE41_RS18090 0.32 +0.6 3,726,970 - ABIE41_RS18090 0.40 -0.4 3,727,032 + ABIE41_RS18090 0.47 +0.7 3,727,032 + ABIE41_RS18090 0.47 +0.5 3,727,033 - ABIE41_RS18090 0.47 +0.6 3,727,215 + ABIE41_RS18090 0.65 +2.4 3,727,216 - ABIE41_RS18090 0.65 +0.4 3,727,216 - ABIE41_RS18090 0.65 +0.6 3,727,216 - ABIE41_RS18090 0.65 -2.9 3,727,216 - ABIE41_RS18090 0.65 +2.1
Or see this region's nucleotide sequence