Strain Fitness in Bosea sp. OAE506 around ABIE41_RS11975

Experiment: R2A with 2-pentyl-furan 21.3684 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS11970 and ABIE41_RS11975 are separated by 243 nucleotidesABIE41_RS11975 and ABIE41_RS11980 are separated by 152 nucleotidesABIE41_RS11980 and ABIE41_RS11985 are separated by 61 nucleotides ABIE41_RS11970: ABIE41_RS11970 - prephenate dehydrogenase, at 2,446,098 to 2,446,967 _RS11970 ABIE41_RS11975: ABIE41_RS11975 - glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit, at 2,447,211 to 2,448,419 _RS11975 ABIE41_RS11980: ABIE41_RS11980 - GatB/YqeY domain-containing protein, at 2,448,572 to 2,449,033 _RS11980 ABIE41_RS11985: ABIE41_RS11985 - hypothetical protein, at 2,449,095 to 2,449,592 _RS11985 Position (kb) 2447 2448 2449Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2447.043 kb on + strandat 2447.044 kb on - strandat 2447.044 kb on - strandat 2447.044 kb on - strandat 2447.076 kb on + strandat 2447.076 kb on + strandat 2447.077 kb on - strandat 2447.079 kb on + strandat 2447.079 kb on + strandat 2447.079 kb on + strandat 2447.079 kb on + strandat 2447.080 kb on - strandat 2448.424 kb on - strandat 2448.424 kb on - strandat 2448.424 kb on - strandat 2448.785 kb on + strand, within ABIE41_RS11980at 2448.785 kb on + strand, within ABIE41_RS11980at 2448.786 kb on - strand, within ABIE41_RS11980at 2448.786 kb on - strand, within ABIE41_RS11980at 2448.851 kb on + strand, within ABIE41_RS11980at 2448.851 kb on + strand, within ABIE41_RS11980at 2448.852 kb on - strand, within ABIE41_RS11980at 2448.852 kb on - strand, within ABIE41_RS11980at 2448.852 kb on - strand, within ABIE41_RS11980at 2448.852 kb on - strand, within ABIE41_RS11980at 2448.852 kb on - strand, within ABIE41_RS11980at 2449.209 kb on + strand, within ABIE41_RS11985at 2449.249 kb on - strand, within ABIE41_RS11985at 2449.302 kb on + strand, within ABIE41_RS11985

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM
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2,447,043 + +1.1
2,447,044 - +0.6
2,447,044 - +2.5
2,447,044 - +1.4
2,447,076 + +0.0
2,447,076 + -1.3
2,447,077 - -0.6
2,447,079 + +0.4
2,447,079 + -0.6
2,447,079 + +0.2
2,447,079 + +0.3
2,447,080 - +0.7
2,448,424 - +1.3
2,448,424 - +3.1
2,448,424 - +1.0
2,448,785 + ABIE41_RS11980 0.46 -0.7
2,448,785 + ABIE41_RS11980 0.46 +1.1
2,448,786 - ABIE41_RS11980 0.46 -2.7
2,448,786 - ABIE41_RS11980 0.46 -0.3
2,448,851 + ABIE41_RS11980 0.60 -3.2
2,448,851 + ABIE41_RS11980 0.60 -0.6
2,448,852 - ABIE41_RS11980 0.61 -2.6
2,448,852 - ABIE41_RS11980 0.61 +0.1
2,448,852 - ABIE41_RS11980 0.61 -0.3
2,448,852 - ABIE41_RS11980 0.61 -0.8
2,448,852 - ABIE41_RS11980 0.61 -1.5
2,449,209 + ABIE41_RS11985 0.23 +0.1
2,449,249 - ABIE41_RS11985 0.31 -1.6
2,449,302 + ABIE41_RS11985 0.42 +1.1

Or see this region's nucleotide sequence