Strain Fitness in Bosea sp. OAE506 around ABIE41_RS09775

Experiment: R2A with 2-pentyl-furan 21.3684 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS09770 and ABIE41_RS09775 overlap by 4 nucleotidesABIE41_RS09775 and ABIE41_RS09780 overlap by 23 nucleotides ABIE41_RS09770: ABIE41_RS09770 - NAD(P)/FAD-dependent oxidoreductase, at 2,019,165 to 2,020,592 _RS09770 ABIE41_RS09775: ABIE41_RS09775 - FAD-binding oxidoreductase, at 2,020,589 to 2,021,758 _RS09775 ABIE41_RS09780: ABIE41_RS09780 - dihydrodipicolinate synthase family protein, at 2,021,736 to 2,022,725 _RS09780 Position (kb) 2020 2021 2022Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2019.827 kb on + strand, within ABIE41_RS09770at 2020.074 kb on + strand, within ABIE41_RS09770at 2020.075 kb on - strand, within ABIE41_RS09770at 2020.301 kb on + strand, within ABIE41_RS09770at 2020.302 kb on - strand, within ABIE41_RS09770at 2020.302 kb on - strand, within ABIE41_RS09770at 2020.492 kb on - strandat 2020.601 kb on + strandat 2020.601 kb on + strandat 2020.602 kb on - strandat 2020.773 kb on - strand, within ABIE41_RS09775at 2021.033 kb on + strand, within ABIE41_RS09775at 2021.033 kb on + strand, within ABIE41_RS09775at 2021.034 kb on - strand, within ABIE41_RS09775at 2021.337 kb on - strand, within ABIE41_RS09775at 2021.434 kb on + strand, within ABIE41_RS09775at 2021.435 kb on - strand, within ABIE41_RS09775at 2021.564 kb on + strand, within ABIE41_RS09775at 2021.564 kb on + strand, within ABIE41_RS09775at 2021.564 kb on + strand, within ABIE41_RS09775at 2021.565 kb on - strand, within ABIE41_RS09775at 2021.565 kb on - strand, within ABIE41_RS09775at 2021.565 kb on - strand, within ABIE41_RS09775at 2021.565 kb on - strand, within ABIE41_RS09775at 2021.565 kb on - strand, within ABIE41_RS09775at 2021.565 kb on - strand, within ABIE41_RS09775at 2021.567 kb on - strand, within ABIE41_RS09775at 2021.567 kb on - strand, within ABIE41_RS09775at 2021.567 kb on - strand, within ABIE41_RS09775at 2021.567 kb on - strand, within ABIE41_RS09775at 2021.567 kb on - strand, within ABIE41_RS09775at 2021.567 kb on - strand, within ABIE41_RS09775at 2021.567 kb on - strand, within ABIE41_RS09775at 2021.567 kb on - strand, within ABIE41_RS09775at 2021.591 kb on + strand, within ABIE41_RS09775at 2021.606 kb on + strand, within ABIE41_RS09775at 2021.606 kb on + strand, within ABIE41_RS09775at 2021.606 kb on + strand, within ABIE41_RS09775at 2021.606 kb on + strand, within ABIE41_RS09775at 2021.606 kb on + strand, within ABIE41_RS09775at 2021.607 kb on - strand, within ABIE41_RS09775at 2022.240 kb on + strand, within ABIE41_RS09780at 2022.240 kb on + strand, within ABIE41_RS09780at 2022.241 kb on - strand, within ABIE41_RS09780at 2022.241 kb on - strand, within ABIE41_RS09780at 2022.241 kb on - strand, within ABIE41_RS09780at 2022.321 kb on + strand, within ABIE41_RS09780at 2022.321 kb on + strand, within ABIE41_RS09780at 2022.322 kb on - strand, within ABIE41_RS09780at 2022.322 kb on - strand, within ABIE41_RS09780at 2022.405 kb on + strand, within ABIE41_RS09780at 2022.405 kb on + strand, within ABIE41_RS09780at 2022.406 kb on - strand, within ABIE41_RS09780at 2022.531 kb on + strand, within ABIE41_RS09780at 2022.531 kb on + strand, within ABIE41_RS09780at 2022.532 kb on - strand, within ABIE41_RS09780at 2022.669 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM
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2,019,827 + ABIE41_RS09770 0.46 +0.0
2,020,074 + ABIE41_RS09770 0.64 -0.3
2,020,075 - ABIE41_RS09770 0.64 -0.9
2,020,301 + ABIE41_RS09770 0.80 -0.2
2,020,302 - ABIE41_RS09770 0.80 +4.4
2,020,302 - ABIE41_RS09770 0.80 -0.6
2,020,492 - +0.8
2,020,601 + +0.7
2,020,601 + +0.2
2,020,602 - +0.5
2,020,773 - ABIE41_RS09775 0.16 -1.3
2,021,033 + ABIE41_RS09775 0.38 +0.5
2,021,033 + ABIE41_RS09775 0.38 +1.8
2,021,034 - ABIE41_RS09775 0.38 +1.7
2,021,337 - ABIE41_RS09775 0.64 +1.7
2,021,434 + ABIE41_RS09775 0.72 +0.3
2,021,435 - ABIE41_RS09775 0.72 -0.7
2,021,564 + ABIE41_RS09775 0.83 -1.9
2,021,564 + ABIE41_RS09775 0.83 -0.3
2,021,564 + ABIE41_RS09775 0.83 -2.0
2,021,565 - ABIE41_RS09775 0.83 -1.3
2,021,565 - ABIE41_RS09775 0.83 -0.3
2,021,565 - ABIE41_RS09775 0.83 +2.9
2,021,565 - ABIE41_RS09775 0.83 +0.5
2,021,565 - ABIE41_RS09775 0.83 +0.1
2,021,565 - ABIE41_RS09775 0.83 -1.4
2,021,567 - ABIE41_RS09775 0.84 -0.1
2,021,567 - ABIE41_RS09775 0.84 -0.1
2,021,567 - ABIE41_RS09775 0.84 +0.1
2,021,567 - ABIE41_RS09775 0.84 -0.3
2,021,567 - ABIE41_RS09775 0.84 +0.1
2,021,567 - ABIE41_RS09775 0.84 +0.8
2,021,567 - ABIE41_RS09775 0.84 -3.2
2,021,567 - ABIE41_RS09775 0.84 -2.7
2,021,591 + ABIE41_RS09775 0.86 +1.9
2,021,606 + ABIE41_RS09775 0.87 +0.5
2,021,606 + ABIE41_RS09775 0.87 +0.7
2,021,606 + ABIE41_RS09775 0.87 -2.0
2,021,606 + ABIE41_RS09775 0.87 +0.5
2,021,606 + ABIE41_RS09775 0.87 -0.4
2,021,607 - ABIE41_RS09775 0.87 -2.2
2,022,240 + ABIE41_RS09780 0.51 -2.7
2,022,240 + ABIE41_RS09780 0.51 +1.3
2,022,241 - ABIE41_RS09780 0.51 +1.5
2,022,241 - ABIE41_RS09780 0.51 -1.1
2,022,241 - ABIE41_RS09780 0.51 -1.1
2,022,321 + ABIE41_RS09780 0.59 -3.8
2,022,321 + ABIE41_RS09780 0.59 +0.6
2,022,322 - ABIE41_RS09780 0.59 +0.4
2,022,322 - ABIE41_RS09780 0.59 -0.0
2,022,405 + ABIE41_RS09780 0.68 +0.5
2,022,405 + ABIE41_RS09780 0.68 -2.0
2,022,406 - ABIE41_RS09780 0.68 -0.2
2,022,531 + ABIE41_RS09780 0.80 -0.3
2,022,531 + ABIE41_RS09780 0.80 +2.3
2,022,532 - ABIE41_RS09780 0.80 +0.6
2,022,669 + +0.1

Or see this region's nucleotide sequence