Strain Fitness in Bosea sp. OAE506 around ABIE41_RS08520

Experiment: R2A with 2-pentyl-furan 21.3684 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS08515 and ABIE41_RS08520 are separated by 489 nucleotidesABIE41_RS08520 and ABIE41_RS08525 are separated by 149 nucleotidesABIE41_RS08525 and ABIE41_RS08530 are separated by 260 nucleotides ABIE41_RS08515: ABIE41_RS08515 - MATE family efflux transporter, at 1,756,564 to 1,757,949 _RS08515 ABIE41_RS08520: ABIE41_RS08520 - tRNA-Val, at 1,758,439 to 1,758,513 _RS08520 ABIE41_RS08525: ABIE41_RS08525 - cell cycle two-component system response regulator CpdR, at 1,758,663 to 1,759,022 _RS08525 ABIE41_RS08530: ABIE41_RS08530 - N-formylglutamate amidohydrolase, at 1,759,283 to 1,760,203 _RS08530 Position (kb) 1758 1759Strain fitness (log2 ratio) -2 -1 0 1 2at 1757.510 kb on + strand, within ABIE41_RS08515at 1757.510 kb on + strand, within ABIE41_RS08515at 1757.552 kb on + strand, within ABIE41_RS08515at 1757.552 kb on + strand, within ABIE41_RS08515at 1757.552 kb on + strand, within ABIE41_RS08515at 1757.552 kb on + strand, within ABIE41_RS08515at 1757.552 kb on + strand, within ABIE41_RS08515at 1757.552 kb on + strand, within ABIE41_RS08515at 1757.552 kb on + strand, within ABIE41_RS08515at 1757.552 kb on + strand, within ABIE41_RS08515at 1757.553 kb on - strand, within ABIE41_RS08515at 1757.553 kb on - strand, within ABIE41_RS08515at 1757.553 kb on - strand, within ABIE41_RS08515at 1757.553 kb on - strand, within ABIE41_RS08515at 1757.783 kb on + strand, within ABIE41_RS08515at 1757.784 kb on - strand, within ABIE41_RS08515at 1757.784 kb on - strand, within ABIE41_RS08515at 1757.784 kb on - strand, within ABIE41_RS08515at 1757.784 kb on - strand, within ABIE41_RS08515at 1757.997 kb on - strandat 1757.997 kb on - strandat 1758.322 kb on - strandat 1758.595 kb on - strandat 1759.180 kb on - strandat 1759.180 kb on - strandat 1759.180 kb on - strandat 1759.180 kb on - strandat 1759.238 kb on + strandat 1759.239 kb on - strandat 1759.239 kb on - strandat 1759.358 kb on + strandat 1759.358 kb on + strandat 1759.358 kb on + strandat 1759.358 kb on + strandat 1759.358 kb on + strandat 1759.359 kb on - strandat 1759.484 kb on + strand, within ABIE41_RS08530at 1759.484 kb on + strand, within ABIE41_RS08530at 1759.484 kb on + strand, within ABIE41_RS08530at 1759.484 kb on + strand, within ABIE41_RS08530at 1759.485 kb on - strand, within ABIE41_RS08530

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM
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1,757,510 + ABIE41_RS08515 0.68 -1.4
1,757,510 + ABIE41_RS08515 0.68 -1.3
1,757,552 + ABIE41_RS08515 0.71 +0.6
1,757,552 + ABIE41_RS08515 0.71 +1.8
1,757,552 + ABIE41_RS08515 0.71 +1.6
1,757,552 + ABIE41_RS08515 0.71 -0.2
1,757,552 + ABIE41_RS08515 0.71 +0.5
1,757,552 + ABIE41_RS08515 0.71 -1.0
1,757,552 + ABIE41_RS08515 0.71 -1.9
1,757,552 + ABIE41_RS08515 0.71 +1.0
1,757,553 - ABIE41_RS08515 0.71 -0.5
1,757,553 - ABIE41_RS08515 0.71 -0.2
1,757,553 - ABIE41_RS08515 0.71 -0.5
1,757,553 - ABIE41_RS08515 0.71 -0.5
1,757,783 + ABIE41_RS08515 0.88 -0.2
1,757,784 - ABIE41_RS08515 0.88 +0.1
1,757,784 - ABIE41_RS08515 0.88 -1.1
1,757,784 - ABIE41_RS08515 0.88 -0.3
1,757,784 - ABIE41_RS08515 0.88 -0.1
1,757,997 - +0.5
1,757,997 - -2.7
1,758,322 - -0.8
1,758,595 - +0.3
1,759,180 - -0.2
1,759,180 - -0.5
1,759,180 - +0.9
1,759,180 - +0.5
1,759,238 + +1.2
1,759,239 - +1.3
1,759,239 - +1.4
1,759,358 + -0.2
1,759,358 + -1.0
1,759,358 + -1.0
1,759,358 + -0.7
1,759,358 + -1.7
1,759,359 - +0.0
1,759,484 + ABIE41_RS08530 0.22 -0.5
1,759,484 + ABIE41_RS08530 0.22 +2.5
1,759,484 + ABIE41_RS08530 0.22 +0.7
1,759,484 + ABIE41_RS08530 0.22 +0.5
1,759,485 - ABIE41_RS08530 0.22 +0.4

Or see this region's nucleotide sequence