Strain Fitness in Bosea sp. OAE506 around ABIE41_RS07615

Experiment: R2A with 2-pentyl-furan 21.3684 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS07605 and ABIE41_RS07610 are separated by 245 nucleotidesABIE41_RS07610 and ABIE41_RS07615 are separated by 99 nucleotidesABIE41_RS07615 and ABIE41_RS07620 are separated by 72 nucleotides ABIE41_RS07605: ABIE41_RS07605 - hypothetical protein, at 1,557,492 to 1,557,812 _RS07605 ABIE41_RS07610: ABIE41_RS07610 - sigma-70 family RNA polymerase sigma factor, at 1,558,058 to 1,558,618 _RS07610 ABIE41_RS07615: ABIE41_RS07615 - hypothetical protein, at 1,558,718 to 1,559,395 _RS07615 ABIE41_RS07620: ABIE41_RS07620 - S8 family serine peptidase, at 1,559,468 to 1,560,907 _RS07620 Position (kb) 1558 1559 1560Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1557.956 kb on + strandat 1557.957 kb on - strandat 1558.007 kb on + strandat 1558.008 kb on - strandat 1558.008 kb on - strandat 1558.008 kb on - strandat 1558.008 kb on - strandat 1558.008 kb on - strandat 1558.008 kb on - strandat 1558.063 kb on + strandat 1558.064 kb on - strandat 1558.304 kb on + strand, within ABIE41_RS07610at 1558.304 kb on + strand, within ABIE41_RS07610at 1558.305 kb on - strand, within ABIE41_RS07610at 1558.305 kb on - strand, within ABIE41_RS07610at 1558.305 kb on - strand, within ABIE41_RS07610at 1558.478 kb on + strand, within ABIE41_RS07610at 1558.478 kb on + strand, within ABIE41_RS07610at 1558.479 kb on - strand, within ABIE41_RS07610at 1558.479 kb on - strand, within ABIE41_RS07610at 1558.479 kb on - strand, within ABIE41_RS07610at 1558.482 kb on - strand, within ABIE41_RS07610at 1558.482 kb on - strand, within ABIE41_RS07610at 1559.721 kb on + strand, within ABIE41_RS07620at 1560.071 kb on + strand, within ABIE41_RS07620at 1560.071 kb on + strand, within ABIE41_RS07620at 1560.071 kb on + strand, within ABIE41_RS07620at 1560.071 kb on + strand, within ABIE41_RS07620at 1560.071 kb on + strand, within ABIE41_RS07620at 1560.071 kb on + strand, within ABIE41_RS07620at 1560.071 kb on + strand, within ABIE41_RS07620at 1560.071 kb on + strand, within ABIE41_RS07620at 1560.071 kb on + strand, within ABIE41_RS07620at 1560.072 kb on - strand, within ABIE41_RS07620at 1560.072 kb on - strand, within ABIE41_RS07620at 1560.200 kb on + strand, within ABIE41_RS07620at 1560.201 kb on - strand, within ABIE41_RS07620at 1560.201 kb on - strand, within ABIE41_RS07620at 1560.201 kb on - strand, within ABIE41_RS07620at 1560.201 kb on - strand, within ABIE41_RS07620

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM
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1,557,956 + +0.5
1,557,957 - -1.3
1,558,007 + +0.7
1,558,008 - -1.8
1,558,008 - +0.6
1,558,008 - +1.1
1,558,008 - -2.8
1,558,008 - -0.9
1,558,008 - -0.4
1,558,063 + +0.1
1,558,064 - -0.6
1,558,304 + ABIE41_RS07610 0.44 -0.2
1,558,304 + ABIE41_RS07610 0.44 -0.9
1,558,305 - ABIE41_RS07610 0.44 +0.0
1,558,305 - ABIE41_RS07610 0.44 +1.4
1,558,305 - ABIE41_RS07610 0.44 +0.9
1,558,478 + ABIE41_RS07610 0.75 +1.1
1,558,478 + ABIE41_RS07610 0.75 -0.0
1,558,479 - ABIE41_RS07610 0.75 -0.2
1,558,479 - ABIE41_RS07610 0.75 +0.4
1,558,479 - ABIE41_RS07610 0.75 -0.4
1,558,482 - ABIE41_RS07610 0.76 +0.4
1,558,482 - ABIE41_RS07610 0.76 +1.1
1,559,721 + ABIE41_RS07620 0.18 -1.2
1,560,071 + ABIE41_RS07620 0.42 -2.1
1,560,071 + ABIE41_RS07620 0.42 -0.3
1,560,071 + ABIE41_RS07620 0.42 -0.4
1,560,071 + ABIE41_RS07620 0.42 +2.4
1,560,071 + ABIE41_RS07620 0.42 -0.6
1,560,071 + ABIE41_RS07620 0.42 -1.2
1,560,071 + ABIE41_RS07620 0.42 +0.3
1,560,071 + ABIE41_RS07620 0.42 -0.6
1,560,071 + ABIE41_RS07620 0.42 +0.4
1,560,072 - ABIE41_RS07620 0.42 -0.9
1,560,072 - ABIE41_RS07620 0.42 -0.7
1,560,200 + ABIE41_RS07620 0.51 +0.1
1,560,201 - ABIE41_RS07620 0.51 -0.2
1,560,201 - ABIE41_RS07620 0.51 +0.7
1,560,201 - ABIE41_RS07620 0.51 -0.6
1,560,201 - ABIE41_RS07620 0.51 -2.2

Or see this region's nucleotide sequence