Strain Fitness in Bosea sp. OAE506 around ABIE41_RS07540

Experiment: R2A with 2-pentyl-furan 21.3684 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS07535 and ABIE41_RS07540 are separated by 130 nucleotidesABIE41_RS07540 and ABIE41_RS07545 are separated by 27 nucleotidesABIE41_RS07545 and ABIE41_RS07550 overlap by 4 nucleotides ABIE41_RS07535: ABIE41_RS07535 - glucose-6-phosphate isomerase, at 1,544,746 to 1,546,362 _RS07535 ABIE41_RS07540: ABIE41_RS07540 - transporter substrate-binding domain-containing protein, at 1,546,493 to 1,547,248 _RS07540 ABIE41_RS07545: ABIE41_RS07545 - RNA pyrophosphohydrolase, at 1,547,276 to 1,547,788 _RS07545 ABIE41_RS07550: ABIE41_RS07550 - divergent polysaccharide deacetylase family protein, at 1,547,785 to 1,548,999 _RS07550 Position (kb) 1546 1547 1548Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1545.855 kb on - strand, within ABIE41_RS07535at 1545.878 kb on + strand, within ABIE41_RS07535at 1546.827 kb on + strand, within ABIE41_RS07540at 1546.827 kb on + strand, within ABIE41_RS07540at 1546.828 kb on - strand, within ABIE41_RS07540at 1546.828 kb on - strand, within ABIE41_RS07540at 1546.914 kb on + strand, within ABIE41_RS07540at 1546.914 kb on + strand, within ABIE41_RS07540at 1546.914 kb on + strand, within ABIE41_RS07540at 1546.914 kb on + strand, within ABIE41_RS07540at 1546.914 kb on + strand, within ABIE41_RS07540at 1546.915 kb on - strand, within ABIE41_RS07540at 1546.915 kb on - strand, within ABIE41_RS07540at 1546.915 kb on - strand, within ABIE41_RS07540at 1546.915 kb on - strand, within ABIE41_RS07540at 1546.935 kb on + strand, within ABIE41_RS07540at 1547.043 kb on + strand, within ABIE41_RS07540at 1547.044 kb on - strand, within ABIE41_RS07540at 1547.044 kb on - strand, within ABIE41_RS07540at 1547.044 kb on - strand, within ABIE41_RS07540at 1547.319 kb on + strandat 1547.760 kb on + strandat 1548.191 kb on + strand, within ABIE41_RS07550at 1548.192 kb on - strand, within ABIE41_RS07550

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM
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1,545,855 - ABIE41_RS07535 0.69 -1.8
1,545,878 + ABIE41_RS07535 0.70 -0.2
1,546,827 + ABIE41_RS07540 0.44 +0.6
1,546,827 + ABIE41_RS07540 0.44 -0.0
1,546,828 - ABIE41_RS07540 0.44 +0.4
1,546,828 - ABIE41_RS07540 0.44 +0.5
1,546,914 + ABIE41_RS07540 0.56 +0.6
1,546,914 + ABIE41_RS07540 0.56 +1.5
1,546,914 + ABIE41_RS07540 0.56 +0.5
1,546,914 + ABIE41_RS07540 0.56 -3.2
1,546,914 + ABIE41_RS07540 0.56 -0.1
1,546,915 - ABIE41_RS07540 0.56 +0.6
1,546,915 - ABIE41_RS07540 0.56 +1.2
1,546,915 - ABIE41_RS07540 0.56 +1.9
1,546,915 - ABIE41_RS07540 0.56 -0.9
1,546,935 + ABIE41_RS07540 0.58 -1.1
1,547,043 + ABIE41_RS07540 0.73 -0.4
1,547,044 - ABIE41_RS07540 0.73 +0.2
1,547,044 - ABIE41_RS07540 0.73 -2.0
1,547,044 - ABIE41_RS07540 0.73 +0.4
1,547,319 + -0.5
1,547,760 + -1.6
1,548,191 + ABIE41_RS07550 0.33 +0.6
1,548,192 - ABIE41_RS07550 0.33 -0.7

Or see this region's nucleotide sequence