Strain Fitness in Bosea sp. OAE506 around ABIE41_RS07305

Experiment: R2A with 2-pentyl-furan 21.3684 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS07300 and ABIE41_RS07305 are separated by 214 nucleotidesABIE41_RS07305 and ABIE41_RS07310 overlap by 4 nucleotidesABIE41_RS07310 and ABIE41_RS07315 overlap by 4 nucleotides ABIE41_RS07300: ABIE41_RS07300 - IlvD/Edd family dehydratase, at 1,505,383 to 1,507,245 _RS07300 ABIE41_RS07305: ABIE41_RS07305 - isocitrate lyase/phosphoenolpyruvate mutase family protein, at 1,507,460 to 1,508,299 _RS07305 ABIE41_RS07310: ABIE41_RS07310 - hypothetical protein, at 1,508,296 to 1,508,622 _RS07310 ABIE41_RS07315: ABIE41_RS07315 - GNAT family protein, at 1,508,619 to 1,509,317 _RS07315 Position (kb) 1507 1508 1509Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1506.564 kb on + strand, within ABIE41_RS07300at 1506.565 kb on + strand, within ABIE41_RS07300at 1506.565 kb on + strand, within ABIE41_RS07300at 1506.565 kb on + strand, within ABIE41_RS07300at 1506.565 kb on + strand, within ABIE41_RS07300at 1506.565 kb on + strand, within ABIE41_RS07300at 1506.565 kb on + strand, within ABIE41_RS07300at 1506.565 kb on + strand, within ABIE41_RS07300at 1506.565 kb on + strand, within ABIE41_RS07300at 1506.566 kb on - strand, within ABIE41_RS07300at 1506.566 kb on - strand, within ABIE41_RS07300at 1506.566 kb on - strand, within ABIE41_RS07300at 1506.566 kb on - strand, within ABIE41_RS07300at 1506.566 kb on - strand, within ABIE41_RS07300at 1506.566 kb on - strand, within ABIE41_RS07300at 1506.742 kb on + strand, within ABIE41_RS07300at 1506.742 kb on + strand, within ABIE41_RS07300at 1506.743 kb on - strand, within ABIE41_RS07300at 1506.823 kb on + strand, within ABIE41_RS07300at 1506.865 kb on + strand, within ABIE41_RS07300at 1506.865 kb on + strand, within ABIE41_RS07300at 1506.865 kb on + strand, within ABIE41_RS07300at 1506.866 kb on - strand, within ABIE41_RS07300at 1506.866 kb on - strand, within ABIE41_RS07300at 1507.102 kb on + strandat 1507.109 kb on - strandat 1507.198 kb on + strandat 1507.662 kb on + strand, within ABIE41_RS07305at 1507.663 kb on - strand, within ABIE41_RS07305at 1507.721 kb on + strand, within ABIE41_RS07305at 1507.721 kb on + strand, within ABIE41_RS07305at 1507.721 kb on + strand, within ABIE41_RS07305at 1507.722 kb on - strand, within ABIE41_RS07305at 1508.006 kb on + strand, within ABIE41_RS07305at 1508.006 kb on + strand, within ABIE41_RS07305at 1508.006 kb on + strand, within ABIE41_RS07305at 1508.006 kb on + strand, within ABIE41_RS07305at 1508.006 kb on + strand, within ABIE41_RS07305at 1508.007 kb on - strand, within ABIE41_RS07305at 1508.007 kb on - strand, within ABIE41_RS07305at 1508.007 kb on - strand, within ABIE41_RS07305at 1508.007 kb on - strand, within ABIE41_RS07305at 1508.398 kb on - strand, within ABIE41_RS07310at 1508.458 kb on + strand, within ABIE41_RS07310at 1508.458 kb on + strand, within ABIE41_RS07310at 1508.458 kb on + strand, within ABIE41_RS07310at 1508.458 kb on + strand, within ABIE41_RS07310at 1508.458 kb on + strand, within ABIE41_RS07310at 1508.459 kb on - strand, within ABIE41_RS07310at 1508.459 kb on - strand, within ABIE41_RS07310at 1508.459 kb on - strand, within ABIE41_RS07310at 1508.459 kb on - strand, within ABIE41_RS07310at 1508.459 kb on - strand, within ABIE41_RS07310at 1508.459 kb on - strand, within ABIE41_RS07310at 1508.459 kb on - strand, within ABIE41_RS07310at 1508.459 kb on - strand, within ABIE41_RS07310at 1508.709 kb on + strand, within ABIE41_RS07315at 1508.709 kb on + strand, within ABIE41_RS07315at 1508.829 kb on + strand, within ABIE41_RS07315at 1508.967 kb on + strand, within ABIE41_RS07315at 1508.967 kb on + strand, within ABIE41_RS07315at 1508.967 kb on + strand, within ABIE41_RS07315at 1508.967 kb on + strand, within ABIE41_RS07315at 1508.968 kb on - strand, within ABIE41_RS07315at 1508.968 kb on - strand, within ABIE41_RS07315at 1508.968 kb on - strand, within ABIE41_RS07315at 1508.968 kb on - strand, within ABIE41_RS07315at 1508.968 kb on - strand, within ABIE41_RS07315at 1508.968 kb on - strand, within ABIE41_RS07315at 1508.976 kb on + strand, within ABIE41_RS07315at 1508.977 kb on - strand, within ABIE41_RS07315at 1508.977 kb on - strand, within ABIE41_RS07315at 1509.130 kb on - strand, within ABIE41_RS07315at 1509.130 kb on - strand, within ABIE41_RS07315at 1509.130 kb on - strand, within ABIE41_RS07315at 1509.130 kb on - strand, within ABIE41_RS07315

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM
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1,506,564 + ABIE41_RS07300 0.63 -1.7
1,506,565 + ABIE41_RS07300 0.63 -1.9
1,506,565 + ABIE41_RS07300 0.63 -1.3
1,506,565 + ABIE41_RS07300 0.63 -1.9
1,506,565 + ABIE41_RS07300 0.63 -2.4
1,506,565 + ABIE41_RS07300 0.63 -0.2
1,506,565 + ABIE41_RS07300 0.63 -0.8
1,506,565 + ABIE41_RS07300 0.63 +0.0
1,506,565 + ABIE41_RS07300 0.63 +0.2
1,506,566 - ABIE41_RS07300 0.63 -2.6
1,506,566 - ABIE41_RS07300 0.63 +1.2
1,506,566 - ABIE41_RS07300 0.63 -0.7
1,506,566 - ABIE41_RS07300 0.63 +1.8
1,506,566 - ABIE41_RS07300 0.63 +1.3
1,506,566 - ABIE41_RS07300 0.63 +0.4
1,506,742 + ABIE41_RS07300 0.73 -0.3
1,506,742 + ABIE41_RS07300 0.73 +0.6
1,506,743 - ABIE41_RS07300 0.73 +0.5
1,506,823 + ABIE41_RS07300 0.77 -0.0
1,506,865 + ABIE41_RS07300 0.80 +0.6
1,506,865 + ABIE41_RS07300 0.80 +0.2
1,506,865 + ABIE41_RS07300 0.80 +0.3
1,506,866 - ABIE41_RS07300 0.80 +1.5
1,506,866 - ABIE41_RS07300 0.80 -1.6
1,507,102 + +1.7
1,507,109 - +1.9
1,507,198 + -0.3
1,507,662 + ABIE41_RS07305 0.24 +0.4
1,507,663 - ABIE41_RS07305 0.24 +1.9
1,507,721 + ABIE41_RS07305 0.31 -0.8
1,507,721 + ABIE41_RS07305 0.31 -0.9
1,507,721 + ABIE41_RS07305 0.31 +1.2
1,507,722 - ABIE41_RS07305 0.31 -0.9
1,508,006 + ABIE41_RS07305 0.65 +0.6
1,508,006 + ABIE41_RS07305 0.65 -0.0
1,508,006 + ABIE41_RS07305 0.65 +1.4
1,508,006 + ABIE41_RS07305 0.65 +0.1
1,508,006 + ABIE41_RS07305 0.65 -0.3
1,508,007 - ABIE41_RS07305 0.65 -0.7
1,508,007 - ABIE41_RS07305 0.65 -0.2
1,508,007 - ABIE41_RS07305 0.65 -3.2
1,508,007 - ABIE41_RS07305 0.65 +0.2
1,508,398 - ABIE41_RS07310 0.31 +0.6
1,508,458 + ABIE41_RS07310 0.50 -2.7
1,508,458 + ABIE41_RS07310 0.50 +0.4
1,508,458 + ABIE41_RS07310 0.50 -0.8
1,508,458 + ABIE41_RS07310 0.50 -0.8
1,508,458 + ABIE41_RS07310 0.50 +0.6
1,508,459 - ABIE41_RS07310 0.50 -0.0
1,508,459 - ABIE41_RS07310 0.50 +0.4
1,508,459 - ABIE41_RS07310 0.50 -3.7
1,508,459 - ABIE41_RS07310 0.50 +3.1
1,508,459 - ABIE41_RS07310 0.50 -1.3
1,508,459 - ABIE41_RS07310 0.50 -0.7
1,508,459 - ABIE41_RS07310 0.50 -0.3
1,508,459 - ABIE41_RS07310 0.50 +0.1
1,508,709 + ABIE41_RS07315 0.13 +1.1
1,508,709 + ABIE41_RS07315 0.13 +0.2
1,508,829 + ABIE41_RS07315 0.30 -4.3
1,508,967 + ABIE41_RS07315 0.50 -0.1
1,508,967 + ABIE41_RS07315 0.50 +2.7
1,508,967 + ABIE41_RS07315 0.50 +0.5
1,508,967 + ABIE41_RS07315 0.50 -1.8
1,508,968 - ABIE41_RS07315 0.50 +0.7
1,508,968 - ABIE41_RS07315 0.50 +0.9
1,508,968 - ABIE41_RS07315 0.50 -2.4
1,508,968 - ABIE41_RS07315 0.50 -0.2
1,508,968 - ABIE41_RS07315 0.50 -0.9
1,508,968 - ABIE41_RS07315 0.50 -3.1
1,508,976 + ABIE41_RS07315 0.51 -0.2
1,508,977 - ABIE41_RS07315 0.51 -1.3
1,508,977 - ABIE41_RS07315 0.51 +1.0
1,509,130 - ABIE41_RS07315 0.73 -0.4
1,509,130 - ABIE41_RS07315 0.73 +0.2
1,509,130 - ABIE41_RS07315 0.73 +1.0
1,509,130 - ABIE41_RS07315 0.73 -2.8

Or see this region's nucleotide sequence