Experiment: R2A with 2-pentyl-furan 21.3684 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS06055 and ABIE41_RS06060 are separated by 43 nucleotides ABIE41_RS06060 and ABIE41_RS06065 are separated by 125 nucleotides
ABIE41_RS06055: ABIE41_RS06055 - DUF3772 domain-containing protein, at 1,248,488 to 1,251,106
_RS06055
ABIE41_RS06060: ABIE41_RS06060 - CAP domain-containing protein, at 1,251,150 to 1,251,635
_RS06060
ABIE41_RS06065: ABIE41_RS06065 - glucan ABC transporter ATP-binding protein/ permease, at 1,251,761 to 1,253,575
_RS06065
Position (kb)
1251
1252 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1250.276 kb on + strand, within ABIE41_RS06055 at 1250.277 kb on - strand, within ABIE41_RS06055 at 1250.277 kb on - strand, within ABIE41_RS06055 at 1250.277 kb on - strand, within ABIE41_RS06055 at 1250.286 kb on - strand, within ABIE41_RS06055 at 1251.206 kb on + strand, within ABIE41_RS06060 at 1251.207 kb on - strand, within ABIE41_RS06060 at 1251.240 kb on + strand, within ABIE41_RS06060 at 1251.240 kb on + strand, within ABIE41_RS06060 at 1251.583 kb on - strand, within ABIE41_RS06060 at 1251.583 kb on - strand, within ABIE41_RS06060 at 1251.601 kb on - strand at 1251.601 kb on - strand at 1251.747 kb on + strand at 1251.747 kb on + strand at 1251.748 kb on - strand at 1251.748 kb on - strand at 1251.779 kb on + strand at 1251.779 kb on + strand at 1251.779 kb on + strand at 1251.779 kb on + strand at 1251.779 kb on + strand at 1251.779 kb on + strand at 1251.780 kb on - strand at 1251.780 kb on - strand at 1251.780 kb on - strand at 1251.780 kb on - strand at 1251.780 kb on - strand at 1251.780 kb on - strand at 1251.947 kb on + strand, within ABIE41_RS06065 at 1252.104 kb on - strand, within ABIE41_RS06065 at 1252.310 kb on + strand, within ABIE41_RS06065 at 1252.311 kb on - strand, within ABIE41_RS06065 at 1252.311 kb on - strand, within ABIE41_RS06065 at 1252.311 kb on - strand, within ABIE41_RS06065 at 1252.355 kb on + strand, within ABIE41_RS06065 at 1252.355 kb on + strand, within ABIE41_RS06065 at 1252.356 kb on - strand, within ABIE41_RS06065 at 1252.356 kb on - strand, within ABIE41_RS06065 at 1252.356 kb on - strand, within ABIE41_RS06065 at 1252.356 kb on - strand, within ABIE41_RS06065
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM remove 1,250,276 + ABIE41_RS06055 0.68 -1.1 1,250,277 - ABIE41_RS06055 0.68 +0.1 1,250,277 - ABIE41_RS06055 0.68 +1.8 1,250,277 - ABIE41_RS06055 0.68 +0.1 1,250,286 - ABIE41_RS06055 0.69 -0.0 1,251,206 + ABIE41_RS06060 0.12 -2.3 1,251,207 - ABIE41_RS06060 0.12 +0.8 1,251,240 + ABIE41_RS06060 0.19 +0.5 1,251,240 + ABIE41_RS06060 0.19 -0.8 1,251,583 - ABIE41_RS06060 0.89 +0.3 1,251,583 - ABIE41_RS06060 0.89 -0.6 1,251,601 - +0.7 1,251,601 - +0.4 1,251,747 + -2.2 1,251,747 + +0.1 1,251,748 - -0.7 1,251,748 - -2.8 1,251,779 + -5.1 1,251,779 + -1.9 1,251,779 + -3.1 1,251,779 + -0.7 1,251,779 + -4.7 1,251,779 + +2.4 1,251,780 - +1.1 1,251,780 - -0.7 1,251,780 - -5.0 1,251,780 - -1.5 1,251,780 - -3.0 1,251,780 - -4.6 1,251,947 + ABIE41_RS06065 0.10 -1.5 1,252,104 - ABIE41_RS06065 0.19 -1.2 1,252,310 + ABIE41_RS06065 0.30 -4.9 1,252,311 - ABIE41_RS06065 0.30 -3.0 1,252,311 - ABIE41_RS06065 0.30 -4.5 1,252,311 - ABIE41_RS06065 0.30 -1.7 1,252,355 + ABIE41_RS06065 0.33 -2.2 1,252,355 + ABIE41_RS06065 0.33 +0.1 1,252,356 - ABIE41_RS06065 0.33 -2.2 1,252,356 - ABIE41_RS06065 0.33 -2.4 1,252,356 - ABIE41_RS06065 0.33 -1.2 1,252,356 - ABIE41_RS06065 0.33 -4.5
Or see this region's nucleotide sequence