Strain Fitness in Bosea sp. OAE506 around ABIE41_RS01755

Experiment: R2A with 2-pentyl-furan 21.3684 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS01750 and ABIE41_RS01755 overlap by 14 nucleotidesABIE41_RS01755 and ABIE41_RS01760 are separated by 67 nucleotidesABIE41_RS01760 and ABIE41_RS01765 are separated by 176 nucleotides ABIE41_RS01750: ABIE41_RS01750 - threonine-phosphate decarboxylase CobD, at 355,341 to 356,354 _RS01750 ABIE41_RS01755: ABIE41_RS01755 - adenosylcobinamide-phosphate synthase CbiB, at 356,341 to 357,360 _RS01755 ABIE41_RS01760: ABIE41_RS01760 - CopG family transcriptional regulator, at 357,428 to 357,655 _RS01760 ABIE41_RS01765: ABIE41_RS01765 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 357,832 to 358,443 _RS01765 Position (kb) 356 357 358Strain fitness (log2 ratio) -1 0 1at 357.563 kb on + strand, within ABIE41_RS01760at 357.564 kb on - strand, within ABIE41_RS01760at 357.564 kb on - strand, within ABIE41_RS01760at 357.564 kb on - strand, within ABIE41_RS01760

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM
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357,563 + ABIE41_RS01760 0.59 -0.4
357,564 - ABIE41_RS01760 0.60 +0.9
357,564 - ABIE41_RS01760 0.60 +0.2
357,564 - ABIE41_RS01760 0.60 +0.2

Or see this region's nucleotide sequence