Experiment: R2A with 2-pentyl-furan 21.3684 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21950 and ABIE41_RS21955 are separated by 73 nucleotides ABIE41_RS21955 and ABIE41_RS21960 are separated by 277 nucleotides
ABIE41_RS21950: ABIE41_RS21950 - malonyl-CoA decarboxylase, at 4,511,755 to 4,513,083
_RS21950
ABIE41_RS21955: ABIE41_RS21955 - 3-oxo-tetronate kinase, at 4,513,157 to 4,514,422
_RS21955
ABIE41_RS21960: ABIE41_RS21960 - ABC transporter substrate-binding protein, at 4,514,700 to 4,516,205
_RS21960
Position (kb) 4513
4514
4515 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.308 kb on + strand, within ABIE41_RS21950 at 4512.309 kb on - strand, within ABIE41_RS21950 at 4512.309 kb on - strand, within ABIE41_RS21950 at 4512.309 kb on - strand, within ABIE41_RS21950 at 4512.309 kb on - strand, within ABIE41_RS21950 at 4512.309 kb on - strand, within ABIE41_RS21950 at 4512.527 kb on + strand, within ABIE41_RS21950 at 4512.999 kb on + strand at 4513.482 kb on + strand, within ABIE41_RS21955 at 4513.482 kb on + strand, within ABIE41_RS21955 at 4513.483 kb on - strand, within ABIE41_RS21955 at 4513.839 kb on + strand, within ABIE41_RS21955 at 4513.840 kb on - strand, within ABIE41_RS21955 at 4513.911 kb on + strand, within ABIE41_RS21955 at 4514.041 kb on - strand, within ABIE41_RS21955 at 4514.049 kb on + strand, within ABIE41_RS21955 at 4514.049 kb on + strand, within ABIE41_RS21955 at 4514.049 kb on + strand, within ABIE41_RS21955 at 4514.050 kb on - strand, within ABIE41_RS21955 at 4514.051 kb on - strand, within ABIE41_RS21955 at 4514.175 kb on + strand, within ABIE41_RS21955 at 4514.175 kb on + strand, within ABIE41_RS21955 at 4514.176 kb on - strand, within ABIE41_RS21955 at 4514.176 kb on - strand, within ABIE41_RS21955 at 4514.470 kb on + strand at 4514.471 kb on - strand at 4514.643 kb on + strand at 4514.644 kb on - strand at 4514.644 kb on - strand at 4514.900 kb on + strand, within ABIE41_RS21960 at 4514.900 kb on + strand, within ABIE41_RS21960 at 4514.900 kb on + strand, within ABIE41_RS21960 at 4514.900 kb on + strand, within ABIE41_RS21960 at 4514.900 kb on + strand, within ABIE41_RS21960 at 4514.901 kb on - strand, within ABIE41_RS21960 at 4514.901 kb on - strand, within ABIE41_RS21960 at 4515.243 kb on + strand, within ABIE41_RS21960 at 4515.243 kb on + strand, within ABIE41_RS21960 at 4515.243 kb on + strand, within ABIE41_RS21960 at 4515.244 kb on - strand, within ABIE41_RS21960 at 4515.318 kb on + strand, within ABIE41_RS21960 at 4515.318 kb on + strand, within ABIE41_RS21960 at 4515.319 kb on - strand, within ABIE41_RS21960 at 4515.319 kb on - strand, within ABIE41_RS21960 at 4515.319 kb on - strand, within ABIE41_RS21960 at 4515.340 kb on - strand, within ABIE41_RS21960
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM remove 4,512,308 + ABIE41_RS21950 0.42 -1.3 4,512,308 + ABIE41_RS21950 0.42 -1.0 4,512,308 + ABIE41_RS21950 0.42 -1.5 4,512,308 + ABIE41_RS21950 0.42 +0.1 4,512,308 + ABIE41_RS21950 0.42 +0.9 4,512,308 + ABIE41_RS21950 0.42 -0.6 4,512,308 + ABIE41_RS21950 0.42 +1.6 4,512,308 + ABIE41_RS21950 0.42 -2.8 4,512,309 - ABIE41_RS21950 0.42 -0.1 4,512,309 - ABIE41_RS21950 0.42 -0.6 4,512,309 - ABIE41_RS21950 0.42 +0.2 4,512,309 - ABIE41_RS21950 0.42 -3.2 4,512,309 - ABIE41_RS21950 0.42 +1.0 4,512,527 + ABIE41_RS21950 0.58 -0.1 4,512,999 + -1.0 4,513,482 + ABIE41_RS21955 0.26 -0.7 4,513,482 + ABIE41_RS21955 0.26 -0.3 4,513,483 - ABIE41_RS21955 0.26 +0.2 4,513,839 + ABIE41_RS21955 0.54 -0.4 4,513,840 - ABIE41_RS21955 0.54 -0.5 4,513,911 + ABIE41_RS21955 0.60 +0.5 4,514,041 - ABIE41_RS21955 0.70 -0.5 4,514,049 + ABIE41_RS21955 0.70 +1.9 4,514,049 + ABIE41_RS21955 0.70 +2.0 4,514,049 + ABIE41_RS21955 0.70 +1.0 4,514,050 - ABIE41_RS21955 0.71 -0.4 4,514,051 - ABIE41_RS21955 0.71 +0.5 4,514,175 + ABIE41_RS21955 0.80 +0.3 4,514,175 + ABIE41_RS21955 0.80 +0.3 4,514,176 - ABIE41_RS21955 0.80 -0.6 4,514,176 - ABIE41_RS21955 0.80 +1.2 4,514,470 + -0.3 4,514,471 - +0.4 4,514,643 + -0.3 4,514,644 - -0.0 4,514,644 - -0.3 4,514,900 + ABIE41_RS21960 0.13 -1.2 4,514,900 + ABIE41_RS21960 0.13 -0.2 4,514,900 + ABIE41_RS21960 0.13 -1.2 4,514,900 + ABIE41_RS21960 0.13 +1.2 4,514,900 + ABIE41_RS21960 0.13 +0.8 4,514,901 - ABIE41_RS21960 0.13 -1.1 4,514,901 - ABIE41_RS21960 0.13 +0.6 4,515,243 + ABIE41_RS21960 0.36 +1.6 4,515,243 + ABIE41_RS21960 0.36 -0.1 4,515,243 + ABIE41_RS21960 0.36 +0.3 4,515,244 - ABIE41_RS21960 0.36 +0.3 4,515,318 + ABIE41_RS21960 0.41 -0.2 4,515,318 + ABIE41_RS21960 0.41 +0.6 4,515,319 - ABIE41_RS21960 0.41 +1.0 4,515,319 - ABIE41_RS21960 0.41 -0.4 4,515,319 - ABIE41_RS21960 0.41 +0.7 4,515,340 - ABIE41_RS21960 0.42 +0.7
Or see this region's nucleotide sequence