Experiment: R2A with 2-pentyl-furan 21.3684 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS18025 and ABIE41_RS18030 overlap by 58 nucleotides ABIE41_RS18030 and ABIE41_RS18035 are separated by 157 nucleotides ABIE41_RS18035 and ABIE41_RS18040 are separated by 190 nucleotides ABIE41_RS18040 and ABIE41_RS18045 are separated by 10 nucleotides
ABIE41_RS18025: ABIE41_RS18025 - amidohydrolase, at 3,713,549 to 3,714,403
_RS18025
ABIE41_RS18030: ABIE41_RS18030 - hypothetical protein, at 3,714,346 to 3,714,744
_RS18030
ABIE41_RS18035: ABIE41_RS18035 - tRNA-Asp, at 3,714,902 to 3,714,978
_RS18035
ABIE41_RS18040: ABIE41_RS18040 - tRNA-Val, at 3,715,169 to 3,715,244
_RS18040
ABIE41_RS18045: ABIE41_RS18045 - methyl-accepting chemotaxis protein, at 3,715,255 to 3,717,060
_RS18045
Position (kb)
3714
3715 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3714.481 kb on - strand, within ABIE41_RS18030 at 3714.481 kb on - strand, within ABIE41_RS18030 at 3714.537 kb on - strand, within ABIE41_RS18030 at 3714.537 kb on - strand, within ABIE41_RS18030 at 3714.537 kb on - strand, within ABIE41_RS18030 at 3714.537 kb on - strand, within ABIE41_RS18030 at 3714.537 kb on - strand, within ABIE41_RS18030 at 3714.537 kb on - strand, within ABIE41_RS18030 at 3714.818 kb on + strand at 3714.819 kb on - strand at 3714.872 kb on - strand at 3715.098 kb on + strand at 3715.099 kb on - strand at 3715.154 kb on + strand at 3715.154 kb on + strand at 3715.154 kb on + strand at 3715.154 kb on + strand at 3715.154 kb on + strand at 3715.155 kb on - strand at 3715.202 kb on + strand, within ABIE41_RS18040 at 3715.203 kb on - strand, within ABIE41_RS18040 at 3715.407 kb on + strand at 3715.407 kb on + strand at 3715.407 kb on + strand at 3715.407 kb on + strand at 3715.408 kb on - strand at 3715.408 kb on - strand at 3715.408 kb on - strand at 3715.437 kb on + strand, within ABIE41_RS18045
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM remove 3,714,481 - ABIE41_RS18030 0.34 +1.5 3,714,481 - ABIE41_RS18030 0.34 +1.6 3,714,537 - ABIE41_RS18030 0.48 +0.4 3,714,537 - ABIE41_RS18030 0.48 +1.0 3,714,537 - ABIE41_RS18030 0.48 +0.1 3,714,537 - ABIE41_RS18030 0.48 -0.5 3,714,537 - ABIE41_RS18030 0.48 +1.2 3,714,537 - ABIE41_RS18030 0.48 -0.7 3,714,818 + +0.1 3,714,819 - +0.2 3,714,872 - +1.8 3,715,098 + +2.4 3,715,099 - -2.8 3,715,154 + +0.5 3,715,154 + -1.3 3,715,154 + -0.4 3,715,154 + +0.1 3,715,154 + -2.3 3,715,155 - -1.6 3,715,202 + ABIE41_RS18040 0.43 -0.8 3,715,203 - ABIE41_RS18040 0.45 -1.6 3,715,407 + +0.2 3,715,407 + -0.5 3,715,407 + -1.8 3,715,407 + +0.0 3,715,408 - +0.1 3,715,408 - +1.5 3,715,408 - -0.1 3,715,437 + ABIE41_RS18045 0.10 +0.3
Or see this region's nucleotide sequence