Strain Fitness in Bosea sp. OAE506 around ABIE41_RS15725

Experiment: R2A with 2-pentyl-furan 21.3684 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS15715 and ABIE41_RS15720 are separated by 108 nucleotidesABIE41_RS15720 and ABIE41_RS15725 are separated by 244 nucleotidesABIE41_RS15725 and ABIE41_RS15730 are separated by 24 nucleotides ABIE41_RS15715: ABIE41_RS15715 - CidA/LrgA family protein, at 3,218,512 to 3,218,883 _RS15715 ABIE41_RS15720: ABIE41_RS15720 - BA14K family protein, at 3,218,992 to 3,219,459 _RS15720 ABIE41_RS15725: ABIE41_RS15725 - TIGR00645 family protein, at 3,219,704 to 3,220,288 _RS15725 ABIE41_RS15730: ABIE41_RS15730 - anthranilate synthase component I, at 3,220,313 to 3,221,842 _RS15730 Position (kb) 3219 3220 3221Strain fitness (log2 ratio) -2 -1 0 1 2at 3219.029 kb on + strandat 3219.029 kb on + strandat 3219.029 kb on + strandat 3219.030 kb on - strandat 3219.030 kb on - strandat 3219.050 kb on + strand, within ABIE41_RS15720at 3219.050 kb on + strand, within ABIE41_RS15720at 3219.050 kb on + strand, within ABIE41_RS15720at 3219.050 kb on + strand, within ABIE41_RS15720at 3219.132 kb on - strand, within ABIE41_RS15720at 3219.153 kb on - strand, within ABIE41_RS15720at 3219.174 kb on - strand, within ABIE41_RS15720at 3219.269 kb on + strand, within ABIE41_RS15720at 3219.522 kb on + strandat 3219.537 kb on + strandat 3219.537 kb on + strandat 3219.538 kb on - strandat 3219.591 kb on + strandat 3219.813 kb on - strand, within ABIE41_RS15725at 3219.842 kb on + strand, within ABIE41_RS15725at 3219.842 kb on + strand, within ABIE41_RS15725at 3219.843 kb on - strand, within ABIE41_RS15725at 3219.843 kb on - strand, within ABIE41_RS15725at 3220.146 kb on + strand, within ABIE41_RS15725at 3220.146 kb on + strand, within ABIE41_RS15725at 3220.146 kb on + strand, within ABIE41_RS15725at 3220.147 kb on - strand, within ABIE41_RS15725at 3220.173 kb on - strand, within ABIE41_RS15725

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM
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3,219,029 + +1.2
3,219,029 + +1.6
3,219,029 + +0.0
3,219,030 - +0.1
3,219,030 - +0.0
3,219,050 + ABIE41_RS15720 0.12 +0.2
3,219,050 + ABIE41_RS15720 0.12 +0.7
3,219,050 + ABIE41_RS15720 0.12 +0.4
3,219,050 + ABIE41_RS15720 0.12 +0.8
3,219,132 - ABIE41_RS15720 0.30 +0.1
3,219,153 - ABIE41_RS15720 0.34 +0.2
3,219,174 - ABIE41_RS15720 0.39 +0.7
3,219,269 + ABIE41_RS15720 0.59 +1.5
3,219,522 + -0.5
3,219,537 + +0.3
3,219,537 + -0.3
3,219,538 - -0.6
3,219,591 + -0.6
3,219,813 - ABIE41_RS15725 0.19 -1.1
3,219,842 + ABIE41_RS15725 0.24 -2.3
3,219,842 + ABIE41_RS15725 0.24 +0.1
3,219,843 - ABIE41_RS15725 0.24 +0.6
3,219,843 - ABIE41_RS15725 0.24 +2.0
3,220,146 + ABIE41_RS15725 0.76 -0.8
3,220,146 + ABIE41_RS15725 0.76 -0.9
3,220,146 + ABIE41_RS15725 0.76 -1.8
3,220,147 - ABIE41_RS15725 0.76 -0.9
3,220,173 - ABIE41_RS15725 0.80 -0.6

Or see this region's nucleotide sequence