Strain Fitness in Bosea sp. OAE506 around ABIE41_RS11775

Experiment: R2A with 2-pentyl-furan 21.3684 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS11770 and ABIE41_RS11775 are separated by 51 nucleotidesABIE41_RS11775 and ABIE41_RS11780 overlap by 4 nucleotidesABIE41_RS11780 and ABIE41_RS11785 are separated by 82 nucleotidesABIE41_RS11785 and ABIE41_RS11790 are separated by 200 nucleotidesABIE41_RS11790 and ABIE41_RS11795 are separated by 8 nucleotides ABIE41_RS11770: ABIE41_RS11770 - transglutaminase family protein, at 2,412,010 to 2,412,822 _RS11770 ABIE41_RS11775: ABIE41_RS11775 - hypothetical protein, at 2,412,874 to 2,413,101 _RS11775 ABIE41_RS11780: ABIE41_RS11780 - hypothetical protein, at 2,413,098 to 2,413,229 _RS11780 ABIE41_RS11785: ABIE41_RS11785 - hypothetical protein, at 2,413,312 to 2,413,491 _RS11785 ABIE41_RS11790: ABIE41_RS11790 - hypothetical protein, at 2,413,692 to 2,413,928 _RS11790 ABIE41_RS11795: ABIE41_RS11795 - hypothetical protein, at 2,413,937 to 2,414,146 _RS11795 Position (kb) 2412 2413 2414Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2412.029 kb on - strandat 2412.040 kb on + strandat 2412.123 kb on + strand, within ABIE41_RS11770at 2412.124 kb on - strand, within ABIE41_RS11770at 2412.210 kb on + strand, within ABIE41_RS11770at 2412.210 kb on + strand, within ABIE41_RS11770at 2412.211 kb on - strand, within ABIE41_RS11770at 2412.387 kb on + strand, within ABIE41_RS11770at 2412.388 kb on - strand, within ABIE41_RS11770at 2412.388 kb on - strand, within ABIE41_RS11770at 2412.454 kb on + strand, within ABIE41_RS11770at 2412.454 kb on + strand, within ABIE41_RS11770at 2412.455 kb on - strand, within ABIE41_RS11770at 2412.455 kb on - strand, within ABIE41_RS11770at 2412.455 kb on - strand, within ABIE41_RS11770at 2412.586 kb on + strand, within ABIE41_RS11770at 2412.586 kb on + strand, within ABIE41_RS11770at 2412.587 kb on - strand, within ABIE41_RS11770at 2412.652 kb on + strand, within ABIE41_RS11770at 2412.652 kb on + strand, within ABIE41_RS11770at 2412.652 kb on + strand, within ABIE41_RS11770at 2412.653 kb on - strand, within ABIE41_RS11770at 2413.404 kb on - strand, within ABIE41_RS11785at 2413.489 kb on + strandat 2413.489 kb on + strandat 2413.489 kb on + strandat 2413.489 kb on + strandat 2413.490 kb on - strandat 2413.499 kb on - strandat 2413.714 kb on + strandat 2414.088 kb on + strand, within ABIE41_RS11795at 2414.088 kb on + strand, within ABIE41_RS11795at 2414.088 kb on + strand, within ABIE41_RS11795at 2414.088 kb on + strand, within ABIE41_RS11795at 2414.089 kb on - strand, within ABIE41_RS11795at 2414.089 kb on - strand, within ABIE41_RS11795

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM
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2,412,029 - +0.1
2,412,040 + -0.2
2,412,123 + ABIE41_RS11770 0.14 +0.9
2,412,124 - ABIE41_RS11770 0.14 -0.0
2,412,210 + ABIE41_RS11770 0.25 +0.5
2,412,210 + ABIE41_RS11770 0.25 +1.1
2,412,211 - ABIE41_RS11770 0.25 +0.3
2,412,387 + ABIE41_RS11770 0.46 +1.0
2,412,388 - ABIE41_RS11770 0.46 -0.1
2,412,388 - ABIE41_RS11770 0.46 -0.1
2,412,454 + ABIE41_RS11770 0.55 +0.2
2,412,454 + ABIE41_RS11770 0.55 -0.2
2,412,455 - ABIE41_RS11770 0.55 +1.5
2,412,455 - ABIE41_RS11770 0.55 +0.6
2,412,455 - ABIE41_RS11770 0.55 -1.4
2,412,586 + ABIE41_RS11770 0.71 +0.1
2,412,586 + ABIE41_RS11770 0.71 +0.7
2,412,587 - ABIE41_RS11770 0.71 -0.7
2,412,652 + ABIE41_RS11770 0.79 -0.1
2,412,652 + ABIE41_RS11770 0.79 -3.0
2,412,652 + ABIE41_RS11770 0.79 +1.3
2,412,653 - ABIE41_RS11770 0.79 -1.3
2,413,404 - ABIE41_RS11785 0.51 +1.9
2,413,489 + -1.8
2,413,489 + -0.3
2,413,489 + +0.4
2,413,489 + +0.8
2,413,490 - +1.5
2,413,499 - -0.2
2,413,714 + -0.1
2,414,088 + ABIE41_RS11795 0.72 +0.1
2,414,088 + ABIE41_RS11795 0.72 -0.2
2,414,088 + ABIE41_RS11795 0.72 -1.3
2,414,088 + ABIE41_RS11795 0.72 -0.2
2,414,089 - ABIE41_RS11795 0.72 -0.8
2,414,089 - ABIE41_RS11795 0.72 -0.9

Or see this region's nucleotide sequence