Experiment: R2A with 2-pentyl-furan 21.3684 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS11770 and ABIE41_RS11775 are separated by 51 nucleotides ABIE41_RS11775 and ABIE41_RS11780 overlap by 4 nucleotides ABIE41_RS11780 and ABIE41_RS11785 are separated by 82 nucleotides ABIE41_RS11785 and ABIE41_RS11790 are separated by 200 nucleotides ABIE41_RS11790 and ABIE41_RS11795 are separated by 8 nucleotides
ABIE41_RS11770: ABIE41_RS11770 - transglutaminase family protein, at 2,412,010 to 2,412,822
_RS11770
ABIE41_RS11775: ABIE41_RS11775 - hypothetical protein, at 2,412,874 to 2,413,101
_RS11775
ABIE41_RS11780: ABIE41_RS11780 - hypothetical protein, at 2,413,098 to 2,413,229
_RS11780
ABIE41_RS11785: ABIE41_RS11785 - hypothetical protein, at 2,413,312 to 2,413,491
_RS11785
ABIE41_RS11790: ABIE41_RS11790 - hypothetical protein, at 2,413,692 to 2,413,928
_RS11790
ABIE41_RS11795: ABIE41_RS11795 - hypothetical protein, at 2,413,937 to 2,414,146
_RS11795
Position (kb)
2412
2413
2414 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2412.029 kb on - strand at 2412.040 kb on + strand at 2412.123 kb on + strand, within ABIE41_RS11770 at 2412.124 kb on - strand, within ABIE41_RS11770 at 2412.210 kb on + strand, within ABIE41_RS11770 at 2412.210 kb on + strand, within ABIE41_RS11770 at 2412.211 kb on - strand, within ABIE41_RS11770 at 2412.387 kb on + strand, within ABIE41_RS11770 at 2412.388 kb on - strand, within ABIE41_RS11770 at 2412.388 kb on - strand, within ABIE41_RS11770 at 2412.454 kb on + strand, within ABIE41_RS11770 at 2412.454 kb on + strand, within ABIE41_RS11770 at 2412.455 kb on - strand, within ABIE41_RS11770 at 2412.455 kb on - strand, within ABIE41_RS11770 at 2412.455 kb on - strand, within ABIE41_RS11770 at 2412.586 kb on + strand, within ABIE41_RS11770 at 2412.586 kb on + strand, within ABIE41_RS11770 at 2412.587 kb on - strand, within ABIE41_RS11770 at 2412.652 kb on + strand, within ABIE41_RS11770 at 2412.652 kb on + strand, within ABIE41_RS11770 at 2412.652 kb on + strand, within ABIE41_RS11770 at 2412.653 kb on - strand, within ABIE41_RS11770 at 2413.404 kb on - strand, within ABIE41_RS11785 at 2413.489 kb on + strand at 2413.489 kb on + strand at 2413.489 kb on + strand at 2413.489 kb on + strand at 2413.490 kb on - strand at 2413.499 kb on - strand at 2413.714 kb on + strand at 2414.088 kb on + strand, within ABIE41_RS11795 at 2414.088 kb on + strand, within ABIE41_RS11795 at 2414.088 kb on + strand, within ABIE41_RS11795 at 2414.088 kb on + strand, within ABIE41_RS11795 at 2414.089 kb on - strand, within ABIE41_RS11795 at 2414.089 kb on - strand, within ABIE41_RS11795
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM remove 2,412,029 - +0.1 2,412,040 + -0.2 2,412,123 + ABIE41_RS11770 0.14 +0.9 2,412,124 - ABIE41_RS11770 0.14 -0.0 2,412,210 + ABIE41_RS11770 0.25 +0.5 2,412,210 + ABIE41_RS11770 0.25 +1.1 2,412,211 - ABIE41_RS11770 0.25 +0.3 2,412,387 + ABIE41_RS11770 0.46 +1.0 2,412,388 - ABIE41_RS11770 0.46 -0.1 2,412,388 - ABIE41_RS11770 0.46 -0.1 2,412,454 + ABIE41_RS11770 0.55 +0.2 2,412,454 + ABIE41_RS11770 0.55 -0.2 2,412,455 - ABIE41_RS11770 0.55 +1.5 2,412,455 - ABIE41_RS11770 0.55 +0.6 2,412,455 - ABIE41_RS11770 0.55 -1.4 2,412,586 + ABIE41_RS11770 0.71 +0.1 2,412,586 + ABIE41_RS11770 0.71 +0.7 2,412,587 - ABIE41_RS11770 0.71 -0.7 2,412,652 + ABIE41_RS11770 0.79 -0.1 2,412,652 + ABIE41_RS11770 0.79 -3.0 2,412,652 + ABIE41_RS11770 0.79 +1.3 2,412,653 - ABIE41_RS11770 0.79 -1.3 2,413,404 - ABIE41_RS11785 0.51 +1.9 2,413,489 + -1.8 2,413,489 + -0.3 2,413,489 + +0.4 2,413,489 + +0.8 2,413,490 - +1.5 2,413,499 - -0.2 2,413,714 + -0.1 2,414,088 + ABIE41_RS11795 0.72 +0.1 2,414,088 + ABIE41_RS11795 0.72 -0.2 2,414,088 + ABIE41_RS11795 0.72 -1.3 2,414,088 + ABIE41_RS11795 0.72 -0.2 2,414,089 - ABIE41_RS11795 0.72 -0.8 2,414,089 - ABIE41_RS11795 0.72 -0.9
Or see this region's nucleotide sequence