Experiment: R2A with 2-pentyl-furan 21.3684 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS07305 and ABIE41_RS07310 overlap by 4 nucleotides ABIE41_RS07310 and ABIE41_RS07315 overlap by 4 nucleotides ABIE41_RS07315 and ABIE41_RS07320 are separated by 36 nucleotides ABIE41_RS07320 and ABIE41_RS07325 are separated by 31 nucleotides
ABIE41_RS07305: ABIE41_RS07305 - isocitrate lyase/phosphoenolpyruvate mutase family protein, at 1,507,460 to 1,508,299
_RS07305
ABIE41_RS07310: ABIE41_RS07310 - hypothetical protein, at 1,508,296 to 1,508,622
_RS07310
ABIE41_RS07315: ABIE41_RS07315 - GNAT family protein, at 1,508,619 to 1,509,317
_RS07315
ABIE41_RS07320: ABIE41_RS07320 - SDR family oxidoreductase, at 1,509,354 to 1,510,100
_RS07320
ABIE41_RS07325: ABIE41_RS07325 - D-erythronate dehydrogenase, at 1,510,132 to 1,511,115
_RS07325
Position (kb)
1508
1509
1510 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1507.662 kb on + strand, within ABIE41_RS07305 at 1507.663 kb on - strand, within ABIE41_RS07305 at 1507.721 kb on + strand, within ABIE41_RS07305 at 1507.721 kb on + strand, within ABIE41_RS07305 at 1507.721 kb on + strand, within ABIE41_RS07305 at 1507.722 kb on - strand, within ABIE41_RS07305 at 1508.006 kb on + strand, within ABIE41_RS07305 at 1508.006 kb on + strand, within ABIE41_RS07305 at 1508.006 kb on + strand, within ABIE41_RS07305 at 1508.006 kb on + strand, within ABIE41_RS07305 at 1508.006 kb on + strand, within ABIE41_RS07305 at 1508.007 kb on - strand, within ABIE41_RS07305 at 1508.007 kb on - strand, within ABIE41_RS07305 at 1508.007 kb on - strand, within ABIE41_RS07305 at 1508.007 kb on - strand, within ABIE41_RS07305 at 1508.398 kb on - strand, within ABIE41_RS07310 at 1508.458 kb on + strand, within ABIE41_RS07310 at 1508.458 kb on + strand, within ABIE41_RS07310 at 1508.458 kb on + strand, within ABIE41_RS07310 at 1508.458 kb on + strand, within ABIE41_RS07310 at 1508.458 kb on + strand, within ABIE41_RS07310 at 1508.459 kb on - strand, within ABIE41_RS07310 at 1508.459 kb on - strand, within ABIE41_RS07310 at 1508.459 kb on - strand, within ABIE41_RS07310 at 1508.459 kb on - strand, within ABIE41_RS07310 at 1508.459 kb on - strand, within ABIE41_RS07310 at 1508.459 kb on - strand, within ABIE41_RS07310 at 1508.459 kb on - strand, within ABIE41_RS07310 at 1508.459 kb on - strand, within ABIE41_RS07310 at 1508.709 kb on + strand, within ABIE41_RS07315 at 1508.709 kb on + strand, within ABIE41_RS07315 at 1508.829 kb on + strand, within ABIE41_RS07315 at 1508.967 kb on + strand, within ABIE41_RS07315 at 1508.967 kb on + strand, within ABIE41_RS07315 at 1508.967 kb on + strand, within ABIE41_RS07315 at 1508.967 kb on + strand, within ABIE41_RS07315 at 1508.968 kb on - strand, within ABIE41_RS07315 at 1508.968 kb on - strand, within ABIE41_RS07315 at 1508.968 kb on - strand, within ABIE41_RS07315 at 1508.968 kb on - strand, within ABIE41_RS07315 at 1508.968 kb on - strand, within ABIE41_RS07315 at 1508.968 kb on - strand, within ABIE41_RS07315 at 1508.976 kb on + strand, within ABIE41_RS07315 at 1508.977 kb on - strand, within ABIE41_RS07315 at 1508.977 kb on - strand, within ABIE41_RS07315 at 1509.130 kb on - strand, within ABIE41_RS07315 at 1509.130 kb on - strand, within ABIE41_RS07315 at 1509.130 kb on - strand, within ABIE41_RS07315 at 1509.130 kb on - strand, within ABIE41_RS07315 at 1509.322 kb on - strand at 1509.597 kb on + strand, within ABIE41_RS07320 at 1509.598 kb on - strand, within ABIE41_RS07320 at 1509.780 kb on + strand, within ABIE41_RS07320 at 1509.780 kb on + strand, within ABIE41_RS07320 at 1509.780 kb on + strand, within ABIE41_RS07320 at 1509.781 kb on - strand, within ABIE41_RS07320 at 1509.786 kb on + strand, within ABIE41_RS07320 at 1509.787 kb on - strand, within ABIE41_RS07320 at 1509.787 kb on - strand, within ABIE41_RS07320 at 1509.787 kb on - strand, within ABIE41_RS07320 at 1510.030 kb on - strand at 1510.053 kb on + strand at 1510.054 kb on - strand at 1510.054 kb on - strand at 1510.054 kb on - strand at 1510.109 kb on - strand at 1510.137 kb on + strand at 1510.137 kb on + strand at 1510.137 kb on + strand at 1510.138 kb on - strand at 1510.138 kb on - strand at 1510.138 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM remove 1,507,662 + ABIE41_RS07305 0.24 -1.5 1,507,663 - ABIE41_RS07305 0.24 -2.0 1,507,721 + ABIE41_RS07305 0.31 -1.4 1,507,721 + ABIE41_RS07305 0.31 -1.1 1,507,721 + ABIE41_RS07305 0.31 -0.2 1,507,722 - ABIE41_RS07305 0.31 -0.8 1,508,006 + ABIE41_RS07305 0.65 +0.2 1,508,006 + ABIE41_RS07305 0.65 -0.4 1,508,006 + ABIE41_RS07305 0.65 -0.3 1,508,006 + ABIE41_RS07305 0.65 +0.2 1,508,006 + ABIE41_RS07305 0.65 -0.3 1,508,007 - ABIE41_RS07305 0.65 +0.8 1,508,007 - ABIE41_RS07305 0.65 +0.6 1,508,007 - ABIE41_RS07305 0.65 -1.0 1,508,007 - ABIE41_RS07305 0.65 -0.6 1,508,398 - ABIE41_RS07310 0.31 -1.6 1,508,458 + ABIE41_RS07310 0.50 -0.3 1,508,458 + ABIE41_RS07310 0.50 +0.5 1,508,458 + ABIE41_RS07310 0.50 +0.5 1,508,458 + ABIE41_RS07310 0.50 -1.7 1,508,458 + ABIE41_RS07310 0.50 -0.7 1,508,459 - ABIE41_RS07310 0.50 +1.1 1,508,459 - ABIE41_RS07310 0.50 -0.7 1,508,459 - ABIE41_RS07310 0.50 -1.2 1,508,459 - ABIE41_RS07310 0.50 +2.9 1,508,459 - ABIE41_RS07310 0.50 -0.1 1,508,459 - ABIE41_RS07310 0.50 +0.7 1,508,459 - ABIE41_RS07310 0.50 -1.4 1,508,459 - ABIE41_RS07310 0.50 +0.2 1,508,709 + ABIE41_RS07315 0.13 +0.5 1,508,709 + ABIE41_RS07315 0.13 -2.0 1,508,829 + ABIE41_RS07315 0.30 +0.0 1,508,967 + ABIE41_RS07315 0.50 +0.3 1,508,967 + ABIE41_RS07315 0.50 -1.6 1,508,967 + ABIE41_RS07315 0.50 -0.1 1,508,967 + ABIE41_RS07315 0.50 -1.0 1,508,968 - ABIE41_RS07315 0.50 -1.2 1,508,968 - ABIE41_RS07315 0.50 +0.5 1,508,968 - ABIE41_RS07315 0.50 +0.9 1,508,968 - ABIE41_RS07315 0.50 +1.3 1,508,968 - ABIE41_RS07315 0.50 +0.3 1,508,968 - ABIE41_RS07315 0.50 -0.9 1,508,976 + ABIE41_RS07315 0.51 -0.7 1,508,977 - ABIE41_RS07315 0.51 +0.4 1,508,977 - ABIE41_RS07315 0.51 -1.2 1,509,130 - ABIE41_RS07315 0.73 +1.1 1,509,130 - ABIE41_RS07315 0.73 +2.2 1,509,130 - ABIE41_RS07315 0.73 -0.1 1,509,130 - ABIE41_RS07315 0.73 -0.6 1,509,322 - -1.7 1,509,597 + ABIE41_RS07320 0.33 -1.1 1,509,598 - ABIE41_RS07320 0.33 -1.1 1,509,780 + ABIE41_RS07320 0.57 -0.0 1,509,780 + ABIE41_RS07320 0.57 +0.9 1,509,780 + ABIE41_RS07320 0.57 -0.5 1,509,781 - ABIE41_RS07320 0.57 +0.1 1,509,786 + ABIE41_RS07320 0.58 -0.9 1,509,787 - ABIE41_RS07320 0.58 -0.4 1,509,787 - ABIE41_RS07320 0.58 +0.3 1,509,787 - ABIE41_RS07320 0.58 +2.9 1,510,030 - +0.0 1,510,053 + +0.8 1,510,054 - +0.4 1,510,054 - -0.1 1,510,054 - -0.6 1,510,109 - -0.3 1,510,137 + -1.5 1,510,137 + +0.6 1,510,137 + -0.2 1,510,138 - +0.8 1,510,138 - +3.2 1,510,138 - +0.3
Or see this region's nucleotide sequence