Strain Fitness in Bosea sp. OAE506 around ABIE41_RS01380

Experiment: R2A with 2-pentyl-furan 21.3684 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS01375 and ABIE41_RS01380 are separated by 25 nucleotidesABIE41_RS01380 and ABIE41_RS01385 are separated by 92 nucleotides ABIE41_RS01375: ABIE41_RS01375 - NAD(P)H-quinone oxidoreductase, at 272,023 to 273,024 _RS01375 ABIE41_RS01380: ABIE41_RS01380 - dienelactone hydrolase family protein, at 273,050 to 273,742 _RS01380 ABIE41_RS01385: ABIE41_RS01385 - alpha/beta hydrolase, at 273,835 to 274,926 _RS01385 Position (kb) 273 274Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 272.320 kb on + strand, within ABIE41_RS01375at 272.320 kb on + strand, within ABIE41_RS01375at 272.321 kb on - strand, within ABIE41_RS01375at 272.321 kb on - strand, within ABIE41_RS01375at 272.330 kb on - strand, within ABIE41_RS01375at 272.330 kb on - strand, within ABIE41_RS01375at 272.410 kb on + strand, within ABIE41_RS01375at 272.410 kb on + strand, within ABIE41_RS01375at 272.410 kb on + strand, within ABIE41_RS01375at 272.411 kb on - strand, within ABIE41_RS01375at 272.411 kb on - strand, within ABIE41_RS01375at 272.411 kb on - strand, within ABIE41_RS01375at 272.542 kb on + strand, within ABIE41_RS01375at 272.542 kb on + strand, within ABIE41_RS01375at 272.542 kb on + strand, within ABIE41_RS01375at 272.542 kb on + strand, within ABIE41_RS01375at 272.542 kb on + strand, within ABIE41_RS01375at 272.542 kb on + strand, within ABIE41_RS01375at 272.542 kb on + strand, within ABIE41_RS01375at 272.698 kb on + strand, within ABIE41_RS01375at 272.698 kb on + strand, within ABIE41_RS01375at 272.698 kb on + strand, within ABIE41_RS01375at 272.698 kb on + strand, within ABIE41_RS01375at 272.699 kb on - strand, within ABIE41_RS01375at 272.699 kb on - strand, within ABIE41_RS01375at 272.699 kb on - strand, within ABIE41_RS01375at 272.699 kb on - strand, within ABIE41_RS01375at 272.700 kb on + strand, within ABIE41_RS01375at 272.700 kb on + strand, within ABIE41_RS01375at 272.701 kb on - strand, within ABIE41_RS01375at 273.063 kb on + strandat 273.297 kb on + strand, within ABIE41_RS01380at 273.297 kb on + strand, within ABIE41_RS01380at 273.297 kb on + strand, within ABIE41_RS01380at 273.298 kb on - strand, within ABIE41_RS01380at 273.298 kb on - strand, within ABIE41_RS01380at 273.456 kb on + strand, within ABIE41_RS01380at 273.510 kb on + strand, within ABIE41_RS01380at 273.510 kb on + strand, within ABIE41_RS01380at 273.511 kb on - strand, within ABIE41_RS01380at 273.531 kb on + strand, within ABIE41_RS01380at 273.531 kb on + strand, within ABIE41_RS01380at 273.532 kb on - strand, within ABIE41_RS01380at 273.532 kb on - strand, within ABIE41_RS01380at 273.567 kb on + strand, within ABIE41_RS01380at 273.568 kb on - strand, within ABIE41_RS01380at 273.938 kb on - strandat 273.947 kb on + strand, within ABIE41_RS01385at 273.947 kb on + strand, within ABIE41_RS01385at 273.947 kb on + strand, within ABIE41_RS01385at 273.947 kb on + strand, within ABIE41_RS01385at 273.947 kb on + strand, within ABIE41_RS01385at 273.947 kb on + strand, within ABIE41_RS01385at 273.948 kb on - strand, within ABIE41_RS01385at 274.098 kb on - strand, within ABIE41_RS01385at 274.221 kb on - strand, within ABIE41_RS01385at 274.221 kb on - strand, within ABIE41_RS01385at 274.221 kb on - strand, within ABIE41_RS01385at 274.337 kb on + strand, within ABIE41_RS01385at 274.338 kb on - strand, within ABIE41_RS01385at 274.367 kb on + strand, within ABIE41_RS01385at 274.367 kb on + strand, within ABIE41_RS01385at 274.367 kb on + strand, within ABIE41_RS01385at 274.368 kb on - strand, within ABIE41_RS01385at 274.368 kb on - strand, within ABIE41_RS01385at 274.368 kb on - strand, within ABIE41_RS01385at 274.368 kb on - strand, within ABIE41_RS01385at 274.368 kb on - strand, within ABIE41_RS01385at 274.371 kb on + strand, within ABIE41_RS01385at 274.371 kb on + strand, within ABIE41_RS01385at 274.371 kb on + strand, within ABIE41_RS01385at 274.371 kb on + strand, within ABIE41_RS01385at 274.371 kb on + strand, within ABIE41_RS01385at 274.371 kb on + strand, within ABIE41_RS01385at 274.371 kb on + strand, within ABIE41_RS01385at 274.372 kb on - strand, within ABIE41_RS01385at 274.372 kb on - strand, within ABIE41_RS01385at 274.373 kb on + strand, within ABIE41_RS01385at 274.374 kb on - strand, within ABIE41_RS01385at 274.490 kb on + strand, within ABIE41_RS01385at 274.580 kb on + strand, within ABIE41_RS01385at 274.580 kb on + strand, within ABIE41_RS01385at 274.580 kb on + strand, within ABIE41_RS01385at 274.580 kb on + strand, within ABIE41_RS01385at 274.580 kb on + strand, within ABIE41_RS01385at 274.581 kb on - strand, within ABIE41_RS01385at 274.581 kb on - strand, within ABIE41_RS01385at 274.581 kb on - strand, within ABIE41_RS01385at 274.581 kb on - strand, within ABIE41_RS01385at 274.665 kb on + strand, within ABIE41_RS01385at 274.665 kb on + strand, within ABIE41_RS01385at 274.666 kb on - strand, within ABIE41_RS01385

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM
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272,320 + ABIE41_RS01375 0.30 -0.6
272,320 + ABIE41_RS01375 0.30 -0.4
272,321 - ABIE41_RS01375 0.30 -0.2
272,321 - ABIE41_RS01375 0.30 -0.5
272,330 - ABIE41_RS01375 0.31 +0.7
272,330 - ABIE41_RS01375 0.31 -0.8
272,410 + ABIE41_RS01375 0.39 -1.0
272,410 + ABIE41_RS01375 0.39 -0.6
272,410 + ABIE41_RS01375 0.39 -1.4
272,411 - ABIE41_RS01375 0.39 -1.2
272,411 - ABIE41_RS01375 0.39 -0.8
272,411 - ABIE41_RS01375 0.39 +1.2
272,542 + ABIE41_RS01375 0.52 +0.0
272,542 + ABIE41_RS01375 0.52 -1.0
272,542 + ABIE41_RS01375 0.52 +0.8
272,542 + ABIE41_RS01375 0.52 -0.5
272,542 + ABIE41_RS01375 0.52 +0.9
272,542 + ABIE41_RS01375 0.52 +0.1
272,542 + ABIE41_RS01375 0.52 +1.3
272,698 + ABIE41_RS01375 0.67 -0.6
272,698 + ABIE41_RS01375 0.67 +0.3
272,698 + ABIE41_RS01375 0.67 -0.4
272,698 + ABIE41_RS01375 0.67 +0.1
272,699 - ABIE41_RS01375 0.67 +0.6
272,699 - ABIE41_RS01375 0.67 +0.1
272,699 - ABIE41_RS01375 0.67 -0.6
272,699 - ABIE41_RS01375 0.67 -0.3
272,700 + ABIE41_RS01375 0.68 +0.6
272,700 + ABIE41_RS01375 0.68 +1.8
272,701 - ABIE41_RS01375 0.68 -0.8
273,063 + -1.8
273,297 + ABIE41_RS01380 0.36 +0.3
273,297 + ABIE41_RS01380 0.36 +0.5
273,297 + ABIE41_RS01380 0.36 -1.0
273,298 - ABIE41_RS01380 0.36 -0.1
273,298 - ABIE41_RS01380 0.36 +0.4
273,456 + ABIE41_RS01380 0.59 +1.6
273,510 + ABIE41_RS01380 0.66 +0.2
273,510 + ABIE41_RS01380 0.66 +0.1
273,511 - ABIE41_RS01380 0.67 -2.2
273,531 + ABIE41_RS01380 0.69 +1.7
273,531 + ABIE41_RS01380 0.69 -0.2
273,532 - ABIE41_RS01380 0.70 +1.9
273,532 - ABIE41_RS01380 0.70 +1.1
273,567 + ABIE41_RS01380 0.75 -0.2
273,568 - ABIE41_RS01380 0.75 -0.8
273,938 - -0.9
273,947 + ABIE41_RS01385 0.10 +0.9
273,947 + ABIE41_RS01385 0.10 +0.2
273,947 + ABIE41_RS01385 0.10 +1.2
273,947 + ABIE41_RS01385 0.10 -0.6
273,947 + ABIE41_RS01385 0.10 -0.1
273,947 + ABIE41_RS01385 0.10 -0.3
273,948 - ABIE41_RS01385 0.10 -2.6
274,098 - ABIE41_RS01385 0.24 -0.3
274,221 - ABIE41_RS01385 0.35 -0.1
274,221 - ABIE41_RS01385 0.35 +1.0
274,221 - ABIE41_RS01385 0.35 -0.3
274,337 + ABIE41_RS01385 0.46 +0.6
274,338 - ABIE41_RS01385 0.46 +0.9
274,367 + ABIE41_RS01385 0.49 +0.8
274,367 + ABIE41_RS01385 0.49 +0.3
274,367 + ABIE41_RS01385 0.49 +1.1
274,368 - ABIE41_RS01385 0.49 -2.6
274,368 - ABIE41_RS01385 0.49 -0.1
274,368 - ABIE41_RS01385 0.49 +0.1
274,368 - ABIE41_RS01385 0.49 -0.2
274,368 - ABIE41_RS01385 0.49 -0.2
274,371 + ABIE41_RS01385 0.49 +0.3
274,371 + ABIE41_RS01385 0.49 -0.7
274,371 + ABIE41_RS01385 0.49 -0.1
274,371 + ABIE41_RS01385 0.49 +0.9
274,371 + ABIE41_RS01385 0.49 +1.9
274,371 + ABIE41_RS01385 0.49 +0.7
274,371 + ABIE41_RS01385 0.49 +0.9
274,372 - ABIE41_RS01385 0.49 +0.5
274,372 - ABIE41_RS01385 0.49 +0.3
274,373 + ABIE41_RS01385 0.49 +1.3
274,374 - ABIE41_RS01385 0.49 -1.6
274,490 + ABIE41_RS01385 0.60 +0.0
274,580 + ABIE41_RS01385 0.68 +4.9
274,580 + ABIE41_RS01385 0.68 +0.8
274,580 + ABIE41_RS01385 0.68 +0.8
274,580 + ABIE41_RS01385 0.68 +1.2
274,580 + ABIE41_RS01385 0.68 +1.0
274,581 - ABIE41_RS01385 0.68 -0.3
274,581 - ABIE41_RS01385 0.68 -1.0
274,581 - ABIE41_RS01385 0.68 -1.1
274,581 - ABIE41_RS01385 0.68 -0.1
274,665 + ABIE41_RS01385 0.76 +1.4
274,665 + ABIE41_RS01385 0.76 +0.9
274,666 - ABIE41_RS01385 0.76 -1.0

Or see this region's nucleotide sequence