Strain Fitness in Pseudomonas sp. RS175 around PFR28_04206

Experiment: L-Carnitine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Carnitine (C)
4,807,730	+		PFR28_04204	0.87	-0.9
4,807,731	-		PFR28_04204	0.88	+0.8
4,808,028	+				-0.6
4,808,028	+				+0.2
4,808,029	-				-1.0
4,808,029	-				-1.6
4,808,058	+				+0.0
4,808,059	-				+0.1
4,808,059	-				+0.7
4,808,059	-				-1.1
4,808,059	-				-1.6
4,808,059	-				-0.1
4,808,350	+		PFR28_04205	0.51	+0.8
4,808,470	+		PFR28_04205	0.70	-0.0
4,808,470	+		PFR28_04205	0.70	-1.2
4,808,481	+		PFR28_04205	0.72	+0.3
4,808,481	+		PFR28_04205	0.72	-0.0
4,808,481	+		PFR28_04205	0.72	+0.6
4,808,481	+		PFR28_04205	0.72	-0.4
4,808,481	+		PFR28_04205	0.72	-1.1
4,808,481	+		PFR28_04205	0.72	-0.3
4,808,481	+		PFR28_04205	0.72	+1.5
4,808,481	+		PFR28_04205	0.72	+0.6
4,808,481	+		PFR28_04205	0.72	+0.8
4,808,481	+		PFR28_04205	0.72	-0.4
4,808,481	+		PFR28_04205	0.72	-0.4
4,808,481	+		PFR28_04205	0.72	-0.3
4,808,481	+		PFR28_04205	0.72	+0.8
4,808,481	+		PFR28_04205	0.72	+0.1
4,808,481	+		PFR28_04205	0.72	+0.9
4,808,481	+		PFR28_04205	0.72	-1.3
4,808,481	+		PFR28_04205	0.72	+0.9
4,808,481	+		PFR28_04205	0.72	+0.8
4,808,481	+		PFR28_04205	0.72	-0.4
4,808,481	+		PFR28_04205	0.72	+0.1
4,808,481	+		PFR28_04205	0.72	+0.1
4,808,482	-		PFR28_04205	0.72	+1.2
4,808,482	-		PFR28_04205	0.72	+0.5
4,808,482	-		PFR28_04205	0.72	+0.2
4,808,482	-		PFR28_04205	0.72	-0.3
4,808,482	-		PFR28_04205	0.72	+0.1
4,808,482	-		PFR28_04205	0.72	-0.9
4,808,482	-		PFR28_04205	0.72	-0.9
4,808,482	-		PFR28_04205	0.72	+0.1
4,808,482	-		PFR28_04205	0.72	-0.0
4,808,482	-		PFR28_04205	0.72	+0.4
4,808,482	-		PFR28_04205	0.72	+0.2
4,808,482	-		PFR28_04205	0.72	-0.7
4,808,482	-		PFR28_04205	0.72	+0.8
4,808,482	-		PFR28_04205	0.72	-1.0
4,808,482	-		PFR28_04205	0.72	+0.7
4,808,482	-		PFR28_04205	0.72	+0.6
4,808,482	-		PFR28_04205	0.72	+0.5
4,808,485	+		PFR28_04205	0.73	+0.2
4,808,485	+		PFR28_04205	0.73	-1.7
4,808,485	+		PFR28_04205	0.73	+0.1
4,808,485	+		PFR28_04205	0.73	+0.8
4,808,485	+		PFR28_04205	0.73	-0.5
4,808,485	+		PFR28_04205	0.73	+0.4
4,808,485	+		PFR28_04205	0.73	-0.2
4,808,485	+		PFR28_04205	0.73	-1.4
4,808,486	-		PFR28_04205	0.73	+0.1
4,808,486	-		PFR28_04205	0.73	-0.7
4,808,486	-		PFR28_04205	0.73	+0.6
4,808,486	-		PFR28_04205	0.73	+0.1
4,808,486	-		PFR28_04205	0.73	+0.2
4,808,488	-		PFR28_04205	0.73	-0.9
4,808,547	+		PFR28_04205	0.83	-0.7
4,808,548	-		PFR28_04205	0.83	-2.2
4,808,631	-				+0.8
4,808,631	-				-1.6
4,808,768	+		PFR28_04206	0.20	-0.4
4,808,768	+		PFR28_04206	0.20	-0.4
4,808,768	+		PFR28_04206	0.20	+0.1
4,808,769	-		PFR28_04206	0.20	+0.2
4,808,883	-		PFR28_04206	0.41	-2.6
4,808,915	+		PFR28_04206	0.47	-0.1
4,808,916	-		PFR28_04206	0.47	-0.6
4,808,916	-		PFR28_04206	0.47	-2.1
4,808,916	-		PFR28_04206	0.47	+0.2
4,808,925	+		PFR28_04206	0.49	-0.3
4,808,925	+		PFR28_04206	0.49	-0.2
4,808,925	+		PFR28_04206	0.49	+0.6
4,808,925	+		PFR28_04206	0.49	-0.9
4,808,925	+		PFR28_04206	0.49	+0.6
4,808,925	+		PFR28_04206	0.49	-0.7
4,808,925	+		PFR28_04206	0.49	+0.9
4,808,926	-		PFR28_04206	0.49	-0.5
4,808,926	-		PFR28_04206	0.49	-2.0
4,808,926	-		PFR28_04206	0.49	+0.3
4,808,963	+		PFR28_04206	0.56	-1.6
4,808,963	+		PFR28_04206	0.56	-0.4
4,808,963	+		PFR28_04206	0.56	-2.1
4,808,963	+		PFR28_04206	0.56	-1.4
4,808,964	-		PFR28_04206	0.56	+0.0
4,808,964	-		PFR28_04206	0.56	+1.1
4,809,073	-		PFR28_04206	0.76	+0.8
4,809,086	+		PFR28_04206	0.78	-0.4
4,809,087	-		PFR28_04206	0.78	+1.5
4,809,087	-		PFR28_04206	0.78	+0.0
4,809,087	-		PFR28_04206	0.78	-1.7
4,809,087	-		PFR28_04206	0.78	+0.4
4,809,087	-		PFR28_04206	0.78	+1.3
4,809,089	+		PFR28_04206	0.78	-1.2
4,809,089	+		PFR28_04206	0.78	-0.2
4,809,089	+		PFR28_04206	0.78	+1.5
4,809,089	+		PFR28_04206	0.78	+0.3
4,809,090	-		PFR28_04206	0.79	-0.6
4,809,090	-		PFR28_04206	0.79	-0.0
4,809,090	-		PFR28_04206	0.79	+0.2
4,809,131	+		PFR28_04206	0.86	+0.3
4,809,132	-		PFR28_04206	0.86	-0.0
4,809,145	+		PFR28_04206	0.89	+0.2
4,809,145	+		PFR28_04206	0.89	+0.0
4,809,145	+		PFR28_04206	0.89	+0.4
4,809,146	-		PFR28_04206	0.89	-1.0
4,809,180	-				+0.2
4,809,200	-				-2.0
4,809,222	-				-1.1
4,809,231	+				+0.4
4,809,249	-				-0.1
4,809,249	-				-0.8
4,809,260	+				+0.5
4,809,260	+				+0.2
4,809,295	+				+0.2
4,809,323	+				-0.1
4,809,334	+				+1.0
4,809,454	+				-0.8
4,809,470	+				-1.0
4,809,470	+				+0.2
4,809,470	+				+0.7
4,809,470	+				+0.5
4,809,471	-				+0.0
4,809,471	-				-0.6
4,809,471	-				+2.1
4,809,472	+				-0.1
4,809,472	+				+0.3
4,809,472	+				-0.1
4,809,472	+				+0.1
4,809,472	+				+0.6
4,809,473	-				-0.8
4,809,473	-				+0.2
4,809,473	-				+0.0
4,809,473	-				-1.0
4,809,474	+				+1.2
4,809,474	+				-0.0
4,809,474	+				-0.3
4,809,474	+				+0.3
4,809,474	+				-1.7
4,809,474	+				-0.8
4,809,474	+				+1.6
4,809,474	+				+1.9
4,809,474	+				-0.0
4,809,474	+				+1.2
4,809,474	+				-1.3
4,809,474	+				-0.0
4,809,474	+				-0.1
4,809,475	-				-1.0
4,809,475	-				-0.4
4,809,475	-				+0.5
4,809,475	-				-0.7
4,809,475	-				-1.8
4,809,475	-				-0.4
4,809,475	-				-0.8
4,809,479	-				-0.6
4,809,559	-				-1.8
4,809,592	+				+2.8
4,809,629	-				-0.7
4,809,629	-				+0.2
4,809,658	+				+1.9
4,809,662	-				-0.0
4,809,723	-				+0.3
4,809,747	+				+0.1
4,809,772	+				-1.2
4,809,870	+				-0.4
4,809,871	-				+1.3
4,809,871	-				-0.7
4,809,881	+				-0.9
4,809,881	+				+0.8
4,809,881	+				+0.3
4,809,881	+				+0.3
4,809,882	-				+1.3
4,809,882	-				+0.9
4,809,882	-				-0.6
4,809,882	-				+0.7
4,809,882	-				+2.9
4,809,984	-				+0.7
4,809,984	-				+2.4
4,810,020	+				+0.0
4,810,021	-				-0.4
4,810,021	-				-0.1
4,810,022	+				+1.9
4,810,023	-				-0.7
4,810,023	-				-1.1
4,810,050	+				+0.0
4,810,051	-				+0.3
4,810,063	+				+0.7
4,810,092	+				-0.6
4,810,092	+				+0.1
4,810,093	-				-1.0
4,810,140	+				+0.4
4,810,141	-				+2.6
4,810,144	+				-1.3
4,810,149	+				-0.1
4,810,149	+				+0.4
4,810,150	-				-0.4
4,810,161	+				-1.4
4,810,162	-				+1.0