Strain Fitness in Pseudomonas sp. RS175 around PFR28_04132

Experiment: L-Carnitine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Carnitine (C)
4,718,862	+		PFR28_04130	0.88	-2.2
4,718,863	-		PFR28_04130	0.88	+0.0
4,718,863	-		PFR28_04130	0.88	+0.1
4,718,863	-		PFR28_04130	0.88	+0.1
4,718,945	-				-0.8
4,719,188	+		PFR28_04131	0.23	-3.5
4,719,188	+		PFR28_04131	0.23	-0.7
4,719,228	+		PFR28_04131	0.30	-1.2
4,719,228	+		PFR28_04131	0.30	-1.4
4,719,228	+		PFR28_04131	0.30	-0.9
4,719,228	+		PFR28_04131	0.30	-1.2
4,719,228	+		PFR28_04131	0.30	-1.6
4,719,229	-		PFR28_04131	0.30	-1.6
4,719,229	-		PFR28_04131	0.30	-0.1
4,719,229	-		PFR28_04131	0.30	-2.8
4,719,229	-		PFR28_04131	0.30	-2.0
4,719,229	-		PFR28_04131	0.30	-0.3
4,719,229	-		PFR28_04131	0.30	-0.2
4,719,654	+				-0.4
4,719,655	-				-0.9
4,719,655	-				-4.1
4,719,673	+				-2.1
4,719,674	-				-1.1
4,719,674	-				-0.4
4,719,674	-				-2.6
4,719,674	-				-2.3
4,719,712	-				+0.1
4,719,712	-				+0.5
4,719,718	-				+0.1
4,719,767	+				-0.4
4,719,849	-				-0.1
4,719,849	-				+0.2
4,719,852	+				-2.8
4,719,852	+				+0.1
4,719,852	+				-0.8
4,719,852	+				-1.1
4,719,852	+				+0.9
4,719,853	-				-0.5
4,719,853	-				-0.1
4,719,993	-				+0.0
4,720,005	+				-1.4
4,720,005	+				-2.1
4,720,005	+				-0.9
4,720,006	-				-2.0
4,720,006	-				-0.6
4,720,013	+				-0.6
4,720,013	+				-2.2
4,720,013	+				-1.4
4,720,013	+				-0.6
4,720,013	+				+0.2
4,720,013	+				-1.6
4,720,014	-				-0.7
4,720,014	-				-2.2
4,720,014	-				-2.4
4,720,014	-				-1.6
4,720,014	-				-2.0
4,720,014	-				-2.8
4,720,269	+		PFR28_04132	0.14	-0.5
4,720,270	-		PFR28_04132	0.14	-2.5
4,720,270	-		PFR28_04132	0.14	+0.3
4,720,331	+		PFR28_04132	0.16	-2.0
4,720,332	-		PFR28_04132	0.16	-1.6
4,720,332	-		PFR28_04132	0.16	-0.3
4,720,377	-		PFR28_04132	0.18	-4.3
4,720,401	-		PFR28_04132	0.18	+0.4
4,720,401	-		PFR28_04132	0.18	-2.7
4,720,589	+		PFR28_04132	0.25	-2.7
4,720,589	+		PFR28_04132	0.25	-0.7
4,720,590	-		PFR28_04132	0.25	-1.2
4,720,590	-		PFR28_04132	0.25	-1.4
4,720,590	-		PFR28_04132	0.25	-3.6
4,720,622	+		PFR28_04132	0.26	-2.4
4,720,622	+		PFR28_04132	0.26	-0.6
4,720,622	+		PFR28_04132	0.26	-1.4
4,720,623	-		PFR28_04132	0.26	-0.6
4,720,623	-		PFR28_04132	0.26	-1.7
4,720,791	+		PFR28_04132	0.31	-0.7
4,720,792	-		PFR28_04132	0.31	-1.2
4,720,793	+		PFR28_04132	0.31	+0.7
4,720,793	+		PFR28_04132	0.31	-2.2
4,720,793	+		PFR28_04132	0.31	-1.3
4,720,793	+		PFR28_04132	0.31	-0.1
4,720,793	+		PFR28_04132	0.31	-2.2
4,720,793	+		PFR28_04132	0.31	-0.4
4,720,794	-		PFR28_04132	0.31	-1.1
4,720,794	-		PFR28_04132	0.31	-1.6
4,720,794	-		PFR28_04132	0.31	-1.4
4,720,794	-		PFR28_04132	0.31	-2.3
4,720,940	+		PFR28_04132	0.36	-2.4
4,720,940	+		PFR28_04132	0.36	-1.7
4,720,941	-		PFR28_04132	0.36	-1.1
4,720,941	-		PFR28_04132	0.36	+0.6
4,720,941	-		PFR28_04132	0.36	-1.4
4,720,941	-		PFR28_04132	0.36	-0.9
4,721,081	+		PFR28_04132	0.41	-2.9
4,721,100	+		PFR28_04132	0.42	+2.2
4,721,100	+		PFR28_04132	0.42	-0.6
4,721,101	-		PFR28_04132	0.42	-1.4
4,721,101	-		PFR28_04132	0.42	-3.7
4,721,101	-		PFR28_04132	0.42	-1.5
4,721,101	-		PFR28_04132	0.42	-0.9
4,721,204	+		PFR28_04132	0.45	-1.6
4,721,468	+		PFR28_04132	0.54	+0.8
4,721,468	+		PFR28_04132	0.54	-0.9
4,721,469	-		PFR28_04132	0.54	+0.2
4,721,469	-		PFR28_04132	0.54	-2.0
4,721,469	-		PFR28_04132	0.54	-3.5
4,721,469	-		PFR28_04132	0.54	-0.3
4,721,469	-		PFR28_04132	0.54	-1.2
4,721,469	-		PFR28_04132	0.54	-3.7
4,721,595	-		PFR28_04132	0.58	-1.6
4,721,914	+		PFR28_04132	0.68	-2.8
4,721,914	+		PFR28_04132	0.68	-3.7
4,721,914	+		PFR28_04132	0.68	-2.6
4,721,914	+		PFR28_04132	0.68	-0.4
4,721,914	+		PFR28_04132	0.68	-2.6
4,721,914	+		PFR28_04132	0.68	-0.6
4,721,914	+		PFR28_04132	0.68	-2.2
4,721,914	+		PFR28_04132	0.68	-3.0
4,721,914	+		PFR28_04132	0.68	-3.8
4,721,914	+		PFR28_04132	0.68	-1.3
4,721,914	+		PFR28_04132	0.68	-2.4
4,721,914	+		PFR28_04132	0.68	-2.7
4,721,915	-		PFR28_04132	0.69	-3.5
4,721,915	-		PFR28_04132	0.69	-3.6
4,721,915	-		PFR28_04132	0.69	-1.9
4,721,915	-		PFR28_04132	0.69	-2.1
4,721,915	-		PFR28_04132	0.69	-3.2
4,721,915	-		PFR28_04132	0.69	-1.7
4,721,915	-		PFR28_04132	0.69	-0.1
4,721,915	-		PFR28_04132	0.69	-0.8
4,721,915	-		PFR28_04132	0.69	-4.0
4,721,915	-		PFR28_04132	0.69	-1.5
4,721,918	+		PFR28_04132	0.69	-2.0
4,721,918	+		PFR28_04132	0.69	+0.3
4,721,918	+		PFR28_04132	0.69	-1.1
4,721,918	+		PFR28_04132	0.69	+0.8
4,721,918	+		PFR28_04132	0.69	-2.5
4,721,918	+		PFR28_04132	0.69	-0.4
4,721,918	+		PFR28_04132	0.69	-0.7
4,721,918	+		PFR28_04132	0.69	-2.2
4,721,918	+		PFR28_04132	0.69	-3.3
4,721,918	+		PFR28_04132	0.69	-0.8
4,721,918	+		PFR28_04132	0.69	-2.1
4,721,918	+		PFR28_04132	0.69	-0.7
4,721,918	+		PFR28_04132	0.69	-3.5
4,721,918	+		PFR28_04132	0.69	-2.0
4,721,918	+		PFR28_04132	0.69	-1.5
4,721,918	+		PFR28_04132	0.69	-2.6
4,721,918	+		PFR28_04132	0.69	-1.0
4,721,918	+		PFR28_04132	0.69	+0.0
4,721,918	+		PFR28_04132	0.69	-2.5
4,721,918	+		PFR28_04132	0.69	-3.2
4,721,918	+		PFR28_04132	0.69	-2.2
4,721,918	+		PFR28_04132	0.69	-1.4
4,721,918	+		PFR28_04132	0.69	-1.4
4,721,918	+		PFR28_04132	0.69	-2.4
4,721,918	+		PFR28_04132	0.69	-2.2
4,721,918	+		PFR28_04132	0.69	-0.3
4,721,918	+		PFR28_04132	0.69	-0.4
4,721,918	+		PFR28_04132	0.69	-1.8
4,721,919	-		PFR28_04132	0.69	-0.1
4,721,919	-		PFR28_04132	0.69	-0.8
4,721,919	-		PFR28_04132	0.69	-1.8
4,721,919	-		PFR28_04132	0.69	-1.6
4,721,919	-		PFR28_04132	0.69	-3.3
4,721,919	-		PFR28_04132	0.69	-2.4
4,721,919	-		PFR28_04132	0.69	-4.5
4,721,919	-		PFR28_04132	0.69	-2.0
4,721,919	-		PFR28_04132	0.69	-0.4
4,721,919	-		PFR28_04132	0.69	-1.5
4,721,919	-		PFR28_04132	0.69	-1.8
4,721,919	-		PFR28_04132	0.69	-1.9
4,721,919	-		PFR28_04132	0.69	-3.1
4,721,919	-		PFR28_04132	0.69	-1.4
4,721,919	-		PFR28_04132	0.69	+0.3
4,721,919	-		PFR28_04132	0.69	-1.0
4,721,919	-		PFR28_04132	0.69	-3.9
4,721,919	-		PFR28_04132	0.69	-0.4
4,721,969	+		PFR28_04132	0.70	-4.0
4,721,970	-		PFR28_04132	0.70	-0.8
4,721,970	-		PFR28_04132	0.70	-2.6
4,721,992	-		PFR28_04132	0.71	-1.2
4,722,368	+		PFR28_04132	0.84	-0.4
4,722,368	+		PFR28_04132	0.84	-1.5
4,722,369	-		PFR28_04132	0.84	-1.9
4,722,369	-		PFR28_04132	0.84	-1.9
4,722,369	-		PFR28_04132	0.84	-2.5
4,722,374	+		PFR28_04132	0.84	-3.8
4,722,374	+		PFR28_04132	0.84	-0.7
4,722,374	+		PFR28_04132	0.84	-0.9
4,722,374	+		PFR28_04132	0.84	-1.4
4,722,374	+		PFR28_04132	0.84	-1.1
4,722,374	+		PFR28_04132	0.84	-1.6
4,722,374	+		PFR28_04132	0.84	-1.7
4,722,374	+		PFR28_04132	0.84	-0.5
4,722,374	+		PFR28_04132	0.84	-2.3
4,722,374	+		PFR28_04132	0.84	-2.4
4,722,374	+		PFR28_04132	0.84	-0.3
4,722,374	+		PFR28_04132	0.84	+0.8
4,722,374	+		PFR28_04132	0.84	-1.3
4,722,374	+		PFR28_04132	0.84	-1.7
4,722,374	+		PFR28_04132	0.84	-1.1
4,722,374	+		PFR28_04132	0.84	-1.3
4,722,374	+		PFR28_04132	0.84	-0.1
4,722,375	-		PFR28_04132	0.84	-2.4
4,722,375	-		PFR28_04132	0.84	-0.3
4,722,375	-		PFR28_04132	0.84	-0.6
4,722,375	-		PFR28_04132	0.84	+0.3
4,722,375	-		PFR28_04132	0.84	-0.7
4,722,375	-		PFR28_04132	0.84	-3.5
4,722,375	-		PFR28_04132	0.84	-2.5
4,722,375	-		PFR28_04132	0.84	+0.3
4,722,375	-		PFR28_04132	0.84	-3.2
4,722,431	+		PFR28_04132	0.86	-2.6
4,722,431	+		PFR28_04132	0.86	-2.0
4,722,431	+		PFR28_04132	0.86	-1.6
4,722,432	-		PFR28_04132	0.86	-0.7
4,722,432	-		PFR28_04132	0.86	-2.1
4,722,432	-		PFR28_04132	0.86	+1.9
4,722,432	-		PFR28_04132	0.86	-1.6
4,722,432	-		PFR28_04132	0.86	-2.0
4,722,440	+		PFR28_04132	0.86	-1.7
4,722,440	+		PFR28_04132	0.86	-0.7
4,722,440	+		PFR28_04132	0.86	-0.7
4,722,440	+		PFR28_04132	0.86	-1.7
4,722,441	-		PFR28_04132	0.86	-3.2
4,722,441	-		PFR28_04132	0.86	-2.9
4,722,464	+		PFR28_04132	0.87	-1.2
4,722,464	+		PFR28_04132	0.87	-1.6
4,722,464	+		PFR28_04132	0.87	-0.3
4,722,465	-		PFR28_04132	0.87	-1.4
4,722,465	-		PFR28_04132	0.87	-2.3
4,722,465	-		PFR28_04132	0.87	-2.2
4,722,465	-		PFR28_04132	0.87	-0.6
4,722,465	-		PFR28_04132	0.87	-1.9
4,722,465	-		PFR28_04132	0.87	-0.4
4,722,479	+		PFR28_04132	0.87	-1.1
4,722,479	+		PFR28_04132	0.87	-0.7
4,722,479	+		PFR28_04132	0.87	-1.0
4,722,479	+		PFR28_04132	0.87	+0.6
4,722,480	-		PFR28_04132	0.87	-3.4
4,722,480	-		PFR28_04132	0.87	-2.2
4,722,480	-		PFR28_04132	0.87	-4.5
4,722,480	-		PFR28_04132	0.87	-1.6
4,722,482	+		PFR28_04132	0.87	-2.6
4,722,483	-		PFR28_04132	0.87	-4.1
4,722,483	-		PFR28_04132	0.87	-1.0
4,722,587	+				-1.7
4,722,588	-				-2.4
4,722,704	+				-2.1
4,722,704	+				-0.9
4,722,704	+				-0.7
4,722,704	+				-2.5
4,722,705	-				-2.4
4,722,705	-				-2.0
4,722,782	+				-0.9
4,722,782	+				-0.3
4,722,782	+				-2.3
4,722,782	+				-0.3
4,722,782	+				-2.5
4,722,782	+				-1.6
4,722,782	+				-2.1
4,722,782	+				-0.7
4,722,782	+				+0.0
4,722,783	-				-3.4
4,722,783	-				-3.3
4,722,864	+				-1.5
4,722,864	+				-1.7
4,722,864	+				-2.1
4,722,865	-				-0.4
4,722,865	-				-2.8
4,722,865	-				-0.2
4,722,943	+		PFR28_04133	0.25	-3.1
4,722,943	+		PFR28_04133	0.25	-1.5
4,722,944	-		PFR28_04133	0.25	-1.3
4,722,961	+		PFR28_04133	0.30	-1.5
4,722,962	-		PFR28_04133	0.31	-1.7
4,722,992	-		PFR28_04133	0.40	-1.4
4,722,992	-		PFR28_04133	0.40	-1.8
4,722,992	-		PFR28_04133	0.40	-0.2
4,723,063	+		PFR28_04133	0.61	+0.1
4,723,063	+		PFR28_04133	0.61	-1.7
4,723,063	+		PFR28_04133	0.61	-0.9
4,723,063	+		PFR28_04133	0.61	-1.8
4,723,063	+		PFR28_04133	0.61	-1.2
4,723,064	-		PFR28_04133	0.62	-1.0
4,723,064	-		PFR28_04133	0.62	-2.6
4,723,064	-		PFR28_04133	0.62	-3.6
4,723,064	-		PFR28_04133	0.62	+0.5
4,723,064	-		PFR28_04133	0.62	-1.5
4,723,064	-		PFR28_04133	0.62	-3.2
4,723,064	-		PFR28_04133	0.62	-1.1
4,723,207	+				-1.5
4,723,207	+				-0.9
4,723,323	+				+0.5
4,723,323	+				-0.2
4,723,323	+				-0.4
4,723,323	+				-0.9
4,723,323	+				-3.4
4,723,324	-				-1.9
4,723,324	-				-0.7
4,723,565	+		PFR28_04134	0.29	+0.3
4,723,609	+		PFR28_04134	0.32	-2.6
4,723,609	+		PFR28_04134	0.32	-2.2
4,723,609	+		PFR28_04134	0.32	-2.7
4,723,610	-		PFR28_04134	0.32	-2.0
4,723,610	-		PFR28_04134	0.32	-3.3
4,723,610	-		PFR28_04134	0.32	-2.9
4,723,610	-		PFR28_04134	0.32	-0.1
4,723,617	+		PFR28_04134	0.33	+0.0
4,723,617	+		PFR28_04134	0.33	-1.1
4,723,618	-		PFR28_04134	0.33	-0.5
4,723,739	+		PFR28_04134	0.43	-2.7
4,723,739	+		PFR28_04134	0.43	-4.7
4,723,740	-		PFR28_04134	0.43	-0.2