Strain Fitness in Bosea sp. OAE506 around ABIE41_RS17700

Experiment: R2A with 2-pentyl-furan 21.3684 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS17695 and ABIE41_RS17700 are separated by 76 nucleotidesABIE41_RS17700 and ABIE41_RS17705 overlap by 4 nucleotidesABIE41_RS17705 and ABIE41_RS17710 are separated by 50 nucleotides ABIE41_RS17695: ABIE41_RS17695 - hypothetical protein, at 3,645,347 to 3,645,526 _RS17695 ABIE41_RS17700: ABIE41_RS17700 - hypothetical protein, at 3,645,603 to 3,646,025 _RS17700 ABIE41_RS17705: ABIE41_RS17705 - DNA polymerase III subunit chi, at 3,646,022 to 3,646,474 _RS17705 ABIE41_RS17710: ABIE41_RS17710 - leucyl aminopeptidase, at 3,646,525 to 3,648,018 _RS17710 Position (kb) 3645 3646 3647Strain fitness (log2 ratio) -2 -1 0 1 2at 3644.708 kb on - strandat 3644.708 kb on - strandat 3644.782 kb on - strandat 3644.829 kb on + strandat 3644.841 kb on + strandat 3644.841 kb on + strandat 3644.851 kb on - strandat 3644.888 kb on + strandat 3644.892 kb on + strandat 3644.892 kb on + strandat 3644.926 kb on - strandat 3644.973 kb on + strandat 3644.986 kb on - strandat 3645.042 kb on + strandat 3645.117 kb on + strandat 3645.118 kb on - strandat 3645.118 kb on - strandat 3645.296 kb on - strandat 3645.557 kb on + strandat 3645.557 kb on + strandat 3645.581 kb on + strandat 3645.581 kb on + strandat 3645.581 kb on + strandat 3645.581 kb on + strandat 3645.582 kb on - strandat 3645.582 kb on - strandat 3645.655 kb on + strand, within ABIE41_RS17700at 3645.656 kb on - strand, within ABIE41_RS17700at 3645.656 kb on - strand, within ABIE41_RS17700at 3646.011 kb on + strandat 3646.011 kb on + strandat 3646.011 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM
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3,644,708 - -0.2
3,644,708 - -0.4
3,644,782 - +0.4
3,644,829 + -0.5
3,644,841 + -0.2
3,644,841 + -0.6
3,644,851 - -0.2
3,644,888 + +2.5
3,644,892 + +1.7
3,644,892 + +2.5
3,644,926 - -0.9
3,644,973 + -0.6
3,644,986 - -0.5
3,645,042 + -1.6
3,645,117 + +0.3
3,645,118 - +0.5
3,645,118 - -0.4
3,645,296 - -0.8
3,645,557 + +0.3
3,645,557 + +0.7
3,645,581 + -0.0
3,645,581 + -0.0
3,645,581 + -0.4
3,645,581 + +0.4
3,645,582 - +0.7
3,645,582 - -1.8
3,645,655 + ABIE41_RS17700 0.12 -0.0
3,645,656 - ABIE41_RS17700 0.13 -1.8
3,645,656 - ABIE41_RS17700 0.13 -0.1
3,646,011 + -1.5
3,646,011 + -0.9
3,646,011 + -0.5

Or see this region's nucleotide sequence