Experiment: R2A with 2-pentyl-furan 21.3684 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS17695 and ABIE41_RS17700 are separated by 76 nucleotides ABIE41_RS17700 and ABIE41_RS17705 overlap by 4 nucleotides ABIE41_RS17705 and ABIE41_RS17710 are separated by 50 nucleotides
ABIE41_RS17695: ABIE41_RS17695 - hypothetical protein, at 3,645,347 to 3,645,526
_RS17695
ABIE41_RS17700: ABIE41_RS17700 - hypothetical protein, at 3,645,603 to 3,646,025
_RS17700
ABIE41_RS17705: ABIE41_RS17705 - DNA polymerase III subunit chi, at 3,646,022 to 3,646,474
_RS17705
ABIE41_RS17710: ABIE41_RS17710 - leucyl aminopeptidase, at 3,646,525 to 3,648,018
_RS17710
Position (kb)
3645
3646
3647 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3644.708 kb on - strand at 3644.708 kb on - strand at 3644.782 kb on - strand at 3644.829 kb on + strand at 3644.841 kb on + strand at 3644.841 kb on + strand at 3644.851 kb on - strand at 3644.888 kb on + strand at 3644.892 kb on + strand at 3644.892 kb on + strand at 3644.926 kb on - strand at 3644.973 kb on + strand at 3644.986 kb on - strand at 3645.042 kb on + strand at 3645.117 kb on + strand at 3645.118 kb on - strand at 3645.118 kb on - strand at 3645.296 kb on - strand at 3645.557 kb on + strand at 3645.557 kb on + strand at 3645.581 kb on + strand at 3645.581 kb on + strand at 3645.581 kb on + strand at 3645.581 kb on + strand at 3645.582 kb on - strand at 3645.582 kb on - strand at 3645.655 kb on + strand, within ABIE41_RS17700 at 3645.656 kb on - strand, within ABIE41_RS17700 at 3645.656 kb on - strand, within ABIE41_RS17700 at 3646.011 kb on + strand at 3646.011 kb on + strand at 3646.011 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM remove 3,644,708 - -0.2 3,644,708 - -0.4 3,644,782 - +0.4 3,644,829 + -0.5 3,644,841 + -0.2 3,644,841 + -0.6 3,644,851 - -0.2 3,644,888 + +2.5 3,644,892 + +1.7 3,644,892 + +2.5 3,644,926 - -0.9 3,644,973 + -0.6 3,644,986 - -0.5 3,645,042 + -1.6 3,645,117 + +0.3 3,645,118 - +0.5 3,645,118 - -0.4 3,645,296 - -0.8 3,645,557 + +0.3 3,645,557 + +0.7 3,645,581 + -0.0 3,645,581 + -0.0 3,645,581 + -0.4 3,645,581 + +0.4 3,645,582 - +0.7 3,645,582 - -1.8 3,645,655 + ABIE41_RS17700 0.12 -0.0 3,645,656 - ABIE41_RS17700 0.13 -1.8 3,645,656 - ABIE41_RS17700 0.13 -0.1 3,646,011 + -1.5 3,646,011 + -0.9 3,646,011 + -0.5
Or see this region's nucleotide sequence