Strain Fitness in Bosea sp. OAE506 around ABIE41_RS12505

Experiment: R2A with 2-pentyl-furan 21.3684 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS12495 and ABIE41_RS12500 are separated by 181 nucleotidesABIE41_RS12500 and ABIE41_RS12505 are separated by 16 nucleotidesABIE41_RS12505 and ABIE41_RS12510 are separated by 97 nucleotides ABIE41_RS12495: ABIE41_RS12495 - flavodoxin family protein, at 2,560,212 to 2,560,781 _RS12495 ABIE41_RS12500: ABIE41_RS12500 - fumarylacetoacetate hydrolase family protein, at 2,560,963 to 2,561,749 _RS12500 ABIE41_RS12505: ABIE41_RS12505 - diguanylate cyclase, at 2,561,766 to 2,562,713 _RS12505 ABIE41_RS12510: ABIE41_RS12510 - ABC transporter permease, at 2,562,811 to 2,564,043 _RS12510 Position (kb) 2561 2562 2563Strain fitness (log2 ratio) -2 -1 0 1at 2561.131 kb on + strand, within ABIE41_RS12500at 2561.131 kb on + strand, within ABIE41_RS12500at 2561.132 kb on - strand, within ABIE41_RS12500at 2561.150 kb on - strand, within ABIE41_RS12500at 2561.152 kb on - strand, within ABIE41_RS12500at 2561.287 kb on + strand, within ABIE41_RS12500at 2561.287 kb on + strand, within ABIE41_RS12500at 2561.287 kb on + strand, within ABIE41_RS12500at 2561.287 kb on + strand, within ABIE41_RS12500at 2561.288 kb on - strand, within ABIE41_RS12500at 2561.288 kb on - strand, within ABIE41_RS12500at 2561.293 kb on + strand, within ABIE41_RS12500at 2561.293 kb on + strand, within ABIE41_RS12500at 2561.294 kb on - strand, within ABIE41_RS12500at 2561.651 kb on + strand, within ABIE41_RS12500at 2561.651 kb on + strand, within ABIE41_RS12500at 2561.651 kb on + strand, within ABIE41_RS12500at 2561.652 kb on - strand, within ABIE41_RS12500at 2561.860 kb on + strandat 2561.860 kb on + strandat 2561.860 kb on + strandat 2561.861 kb on - strand, within ABIE41_RS12505at 2561.861 kb on - strand, within ABIE41_RS12505at 2561.861 kb on - strand, within ABIE41_RS12505at 2561.861 kb on - strand, within ABIE41_RS12505at 2561.988 kb on + strand, within ABIE41_RS12505at 2561.989 kb on - strand, within ABIE41_RS12505at 2562.523 kb on + strand, within ABIE41_RS12505at 2562.523 kb on + strand, within ABIE41_RS12505at 2562.523 kb on + strand, within ABIE41_RS12505at 2562.523 kb on + strand, within ABIE41_RS12505at 2562.524 kb on - strand, within ABIE41_RS12505at 2562.524 kb on - strand, within ABIE41_RS12505at 2562.524 kb on - strand, within ABIE41_RS12505at 2562.583 kb on + strand, within ABIE41_RS12505at 2562.583 kb on + strand, within ABIE41_RS12505at 2562.762 kb on + strandat 2562.762 kb on + strandat 2562.866 kb on + strandat 2563.347 kb on + strand, within ABIE41_RS12510at 2563.347 kb on + strand, within ABIE41_RS12510at 2563.348 kb on - strand, within ABIE41_RS12510at 2563.348 kb on - strand, within ABIE41_RS12510at 2563.382 kb on + strand, within ABIE41_RS12510

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM
remove
2,561,131 + ABIE41_RS12500 0.21 -0.2
2,561,131 + ABIE41_RS12500 0.21 +1.2
2,561,132 - ABIE41_RS12500 0.21 -0.9
2,561,150 - ABIE41_RS12500 0.24 -1.0
2,561,152 - ABIE41_RS12500 0.24 -0.1
2,561,287 + ABIE41_RS12500 0.41 +0.9
2,561,287 + ABIE41_RS12500 0.41 +0.3
2,561,287 + ABIE41_RS12500 0.41 -1.0
2,561,287 + ABIE41_RS12500 0.41 -0.4
2,561,288 - ABIE41_RS12500 0.41 +1.7
2,561,288 - ABIE41_RS12500 0.41 +0.4
2,561,293 + ABIE41_RS12500 0.42 +0.4
2,561,293 + ABIE41_RS12500 0.42 -1.9
2,561,294 - ABIE41_RS12500 0.42 -1.8
2,561,651 + ABIE41_RS12500 0.87 +0.1
2,561,651 + ABIE41_RS12500 0.87 -0.1
2,561,651 + ABIE41_RS12500 0.87 -0.8
2,561,652 - ABIE41_RS12500 0.88 +0.2
2,561,860 + +0.8
2,561,860 + -1.3
2,561,860 + -0.4
2,561,861 - ABIE41_RS12505 0.10 -0.1
2,561,861 - ABIE41_RS12505 0.10 +1.2
2,561,861 - ABIE41_RS12505 0.10 -2.5
2,561,861 - ABIE41_RS12505 0.10 +0.7
2,561,988 + ABIE41_RS12505 0.23 -0.4
2,561,989 - ABIE41_RS12505 0.24 +0.7
2,562,523 + ABIE41_RS12505 0.80 -0.3
2,562,523 + ABIE41_RS12505 0.80 -1.5
2,562,523 + ABIE41_RS12505 0.80 -0.5
2,562,523 + ABIE41_RS12505 0.80 -0.7
2,562,524 - ABIE41_RS12505 0.80 -0.8
2,562,524 - ABIE41_RS12505 0.80 -1.7
2,562,524 - ABIE41_RS12505 0.80 -0.5
2,562,583 + ABIE41_RS12505 0.86 -1.9
2,562,583 + ABIE41_RS12505 0.86 +0.2
2,562,762 + -0.7
2,562,762 + -0.8
2,562,866 + -1.6
2,563,347 + ABIE41_RS12510 0.43 +0.1
2,563,347 + ABIE41_RS12510 0.43 +1.1
2,563,348 - ABIE41_RS12510 0.44 +0.7
2,563,348 - ABIE41_RS12510 0.44 -0.6
2,563,382 + ABIE41_RS12510 0.46 +0.4

Or see this region's nucleotide sequence