Experiment: R2A with 2-pentyl-furan 21.3684 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS09045 and ABIE41_RS09050 are separated by 14 nucleotides ABIE41_RS09050 and ABIE41_RS09055 overlap by 8 nucleotides ABIE41_RS09055 and ABIE41_RS09060 are separated by 132 nucleotides ABIE41_RS09060 and ABIE41_RS09065 are separated by 108 nucleotides
ABIE41_RS09045: ABIE41_RS09045 - patatin-like phospholipase family protein, at 1,874,632 to 1,875,702
_RS09045
ABIE41_RS09050: ABIE41_RS09050 - type II toxin-antitoxin system RelE/ParE family toxin, at 1,875,717 to 1,876,007
_RS09050
ABIE41_RS09055: ABIE41_RS09055 - type II toxin-antitoxin system ParD family antitoxin, at 1,876,000 to 1,876,269
_RS09055
ABIE41_RS09060: ABIE41_RS09060 - DUF3830 family protein, at 1,876,402 to 1,876,815
_RS09060
ABIE41_RS09065: ABIE41_RS09065 - YbaL family putative K(+) efflux transporter, at 1,876,924 to 1,878,678
_RS09065
Position (kb)
1875
1876
1877 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1875.034 kb on + strand, within ABIE41_RS09045 at 1875.263 kb on - strand, within ABIE41_RS09045 at 1875.310 kb on + strand, within ABIE41_RS09045 at 1875.310 kb on + strand, within ABIE41_RS09045 at 1875.310 kb on + strand, within ABIE41_RS09045 at 1875.310 kb on + strand, within ABIE41_RS09045 at 1875.310 kb on + strand, within ABIE41_RS09045 at 1875.311 kb on - strand, within ABIE41_RS09045 at 1875.363 kb on + strand, within ABIE41_RS09045 at 1875.503 kb on - strand, within ABIE41_RS09045 at 1875.503 kb on - strand, within ABIE41_RS09045 at 1875.574 kb on - strand, within ABIE41_RS09045 at 1875.732 kb on - strand at 1875.791 kb on - strand, within ABIE41_RS09050 at 1875.791 kb on - strand, within ABIE41_RS09050 at 1875.910 kb on + strand, within ABIE41_RS09050 at 1875.910 kb on + strand, within ABIE41_RS09050 at 1875.911 kb on - strand, within ABIE41_RS09050 at 1875.911 kb on - strand, within ABIE41_RS09050 at 1875.911 kb on - strand, within ABIE41_RS09050 at 1875.911 kb on - strand, within ABIE41_RS09050 at 1875.965 kb on - strand, within ABIE41_RS09050 at 1876.196 kb on + strand, within ABIE41_RS09055 at 1876.196 kb on + strand, within ABIE41_RS09055 at 1876.282 kb on + strand at 1876.282 kb on + strand at 1876.283 kb on - strand at 1876.287 kb on + strand at 1876.287 kb on + strand at 1876.287 kb on + strand at 1876.287 kb on + strand at 1876.288 kb on - strand at 1876.318 kb on + strand at 1876.330 kb on - strand at 1876.371 kb on + strand at 1876.451 kb on + strand, within ABIE41_RS09060 at 1876.603 kb on + strand, within ABIE41_RS09060 at 1876.603 kb on + strand, within ABIE41_RS09060 at 1876.630 kb on + strand, within ABIE41_RS09060 at 1876.631 kb on - strand, within ABIE41_RS09060 at 1876.631 kb on - strand, within ABIE41_RS09060 at 1877.156 kb on + strand, within ABIE41_RS09065
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM remove 1,875,034 + ABIE41_RS09045 0.38 +0.7 1,875,263 - ABIE41_RS09045 0.59 +0.0 1,875,310 + ABIE41_RS09045 0.63 -1.3 1,875,310 + ABIE41_RS09045 0.63 -0.3 1,875,310 + ABIE41_RS09045 0.63 +0.3 1,875,310 + ABIE41_RS09045 0.63 +0.8 1,875,310 + ABIE41_RS09045 0.63 -1.2 1,875,311 - ABIE41_RS09045 0.63 +1.3 1,875,363 + ABIE41_RS09045 0.68 -1.1 1,875,503 - ABIE41_RS09045 0.81 -0.9 1,875,503 - ABIE41_RS09045 0.81 +0.3 1,875,574 - ABIE41_RS09045 0.88 -0.7 1,875,732 - -0.7 1,875,791 - ABIE41_RS09050 0.25 +1.4 1,875,791 - ABIE41_RS09050 0.25 -0.2 1,875,910 + ABIE41_RS09050 0.66 +1.0 1,875,910 + ABIE41_RS09050 0.66 -0.7 1,875,911 - ABIE41_RS09050 0.67 -0.7 1,875,911 - ABIE41_RS09050 0.67 +0.8 1,875,911 - ABIE41_RS09050 0.67 +1.0 1,875,911 - ABIE41_RS09050 0.67 -2.3 1,875,965 - ABIE41_RS09050 0.85 -0.3 1,876,196 + ABIE41_RS09055 0.73 +1.7 1,876,196 + ABIE41_RS09055 0.73 +1.2 1,876,282 + -0.4 1,876,282 + -0.6 1,876,283 - +0.3 1,876,287 + -1.1 1,876,287 + -2.0 1,876,287 + -0.2 1,876,287 + -0.9 1,876,288 - -2.1 1,876,318 + -0.7 1,876,330 - +0.9 1,876,371 + -0.4 1,876,451 + ABIE41_RS09060 0.12 +0.4 1,876,603 + ABIE41_RS09060 0.49 -1.0 1,876,603 + ABIE41_RS09060 0.49 +2.4 1,876,630 + ABIE41_RS09060 0.55 -0.4 1,876,631 - ABIE41_RS09060 0.55 +0.5 1,876,631 - ABIE41_RS09060 0.55 -0.6 1,877,156 + ABIE41_RS09065 0.13 +0.6
Or see this region's nucleotide sequence