Strain Fitness in Bosea sp. OAE506 around ABIE41_RS09055

Experiment: R2A with 2-pentyl-furan 21.3684 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS09045 and ABIE41_RS09050 are separated by 14 nucleotidesABIE41_RS09050 and ABIE41_RS09055 overlap by 8 nucleotidesABIE41_RS09055 and ABIE41_RS09060 are separated by 132 nucleotidesABIE41_RS09060 and ABIE41_RS09065 are separated by 108 nucleotides ABIE41_RS09045: ABIE41_RS09045 - patatin-like phospholipase family protein, at 1,874,632 to 1,875,702 _RS09045 ABIE41_RS09050: ABIE41_RS09050 - type II toxin-antitoxin system RelE/ParE family toxin, at 1,875,717 to 1,876,007 _RS09050 ABIE41_RS09055: ABIE41_RS09055 - type II toxin-antitoxin system ParD family antitoxin, at 1,876,000 to 1,876,269 _RS09055 ABIE41_RS09060: ABIE41_RS09060 - DUF3830 family protein, at 1,876,402 to 1,876,815 _RS09060 ABIE41_RS09065: ABIE41_RS09065 - YbaL family putative K(+) efflux transporter, at 1,876,924 to 1,878,678 _RS09065 Position (kb) 1875 1876 1877Strain fitness (log2 ratio) -2 -1 0 1 2at 1875.034 kb on + strand, within ABIE41_RS09045at 1875.263 kb on - strand, within ABIE41_RS09045at 1875.310 kb on + strand, within ABIE41_RS09045at 1875.310 kb on + strand, within ABIE41_RS09045at 1875.310 kb on + strand, within ABIE41_RS09045at 1875.310 kb on + strand, within ABIE41_RS09045at 1875.310 kb on + strand, within ABIE41_RS09045at 1875.311 kb on - strand, within ABIE41_RS09045at 1875.363 kb on + strand, within ABIE41_RS09045at 1875.503 kb on - strand, within ABIE41_RS09045at 1875.503 kb on - strand, within ABIE41_RS09045at 1875.574 kb on - strand, within ABIE41_RS09045at 1875.732 kb on - strandat 1875.791 kb on - strand, within ABIE41_RS09050at 1875.791 kb on - strand, within ABIE41_RS09050at 1875.910 kb on + strand, within ABIE41_RS09050at 1875.910 kb on + strand, within ABIE41_RS09050at 1875.911 kb on - strand, within ABIE41_RS09050at 1875.911 kb on - strand, within ABIE41_RS09050at 1875.911 kb on - strand, within ABIE41_RS09050at 1875.911 kb on - strand, within ABIE41_RS09050at 1875.965 kb on - strand, within ABIE41_RS09050at 1876.196 kb on + strand, within ABIE41_RS09055at 1876.196 kb on + strand, within ABIE41_RS09055at 1876.282 kb on + strandat 1876.282 kb on + strandat 1876.283 kb on - strandat 1876.287 kb on + strandat 1876.287 kb on + strandat 1876.287 kb on + strandat 1876.287 kb on + strandat 1876.288 kb on - strandat 1876.318 kb on + strandat 1876.330 kb on - strandat 1876.371 kb on + strandat 1876.451 kb on + strand, within ABIE41_RS09060at 1876.603 kb on + strand, within ABIE41_RS09060at 1876.603 kb on + strand, within ABIE41_RS09060at 1876.630 kb on + strand, within ABIE41_RS09060at 1876.631 kb on - strand, within ABIE41_RS09060at 1876.631 kb on - strand, within ABIE41_RS09060at 1877.156 kb on + strand, within ABIE41_RS09065

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM
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1,875,034 + ABIE41_RS09045 0.38 +0.7
1,875,263 - ABIE41_RS09045 0.59 +0.0
1,875,310 + ABIE41_RS09045 0.63 -1.3
1,875,310 + ABIE41_RS09045 0.63 -0.3
1,875,310 + ABIE41_RS09045 0.63 +0.3
1,875,310 + ABIE41_RS09045 0.63 +0.8
1,875,310 + ABIE41_RS09045 0.63 -1.2
1,875,311 - ABIE41_RS09045 0.63 +1.3
1,875,363 + ABIE41_RS09045 0.68 -1.1
1,875,503 - ABIE41_RS09045 0.81 -0.9
1,875,503 - ABIE41_RS09045 0.81 +0.3
1,875,574 - ABIE41_RS09045 0.88 -0.7
1,875,732 - -0.7
1,875,791 - ABIE41_RS09050 0.25 +1.4
1,875,791 - ABIE41_RS09050 0.25 -0.2
1,875,910 + ABIE41_RS09050 0.66 +1.0
1,875,910 + ABIE41_RS09050 0.66 -0.7
1,875,911 - ABIE41_RS09050 0.67 -0.7
1,875,911 - ABIE41_RS09050 0.67 +0.8
1,875,911 - ABIE41_RS09050 0.67 +1.0
1,875,911 - ABIE41_RS09050 0.67 -2.3
1,875,965 - ABIE41_RS09050 0.85 -0.3
1,876,196 + ABIE41_RS09055 0.73 +1.7
1,876,196 + ABIE41_RS09055 0.73 +1.2
1,876,282 + -0.4
1,876,282 + -0.6
1,876,283 - +0.3
1,876,287 + -1.1
1,876,287 + -2.0
1,876,287 + -0.2
1,876,287 + -0.9
1,876,288 - -2.1
1,876,318 + -0.7
1,876,330 - +0.9
1,876,371 + -0.4
1,876,451 + ABIE41_RS09060 0.12 +0.4
1,876,603 + ABIE41_RS09060 0.49 -1.0
1,876,603 + ABIE41_RS09060 0.49 +2.4
1,876,630 + ABIE41_RS09060 0.55 -0.4
1,876,631 - ABIE41_RS09060 0.55 +0.5
1,876,631 - ABIE41_RS09060 0.55 -0.6
1,877,156 + ABIE41_RS09065 0.13 +0.6

Or see this region's nucleotide sequence