Strain Fitness in Bosea sp. OAE506 around ABIE41_RS07715

Experiment: R2A with 2-pentyl-furan 21.3684 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS07705 and ABIE41_RS07710 overlap by 4 nucleotidesABIE41_RS07710 and ABIE41_RS07715 are separated by 110 nucleotidesABIE41_RS07715 and ABIE41_RS07720 are separated by 61 nucleotides ABIE41_RS07705: ABIE41_RS07705 - phosphonate ABC transporter, permease protein PhnE, at 1,574,488 to 1,575,342 _RS07705 ABIE41_RS07710: ABIE41_RS07710 - phosphonate ABC transporter, permease protein PhnE, at 1,575,339 to 1,576,220 _RS07710 ABIE41_RS07715: ABIE41_RS07715 - phosphonate ABC transporter substrate-binding protein, at 1,576,331 to 1,577,248 _RS07715 ABIE41_RS07720: ABIE41_RS07720 - phosphonate ABC transporter ATP-binding protein, at 1,577,310 to 1,578,128 _RS07720 Position (kb) 1576 1577 1578Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1575.451 kb on + strand, within ABIE41_RS07710at 1575.557 kb on - strand, within ABIE41_RS07710at 1575.557 kb on - strand, within ABIE41_RS07710at 1575.557 kb on - strand, within ABIE41_RS07710at 1575.873 kb on + strand, within ABIE41_RS07710at 1575.873 kb on + strand, within ABIE41_RS07710at 1575.873 kb on + strand, within ABIE41_RS07710at 1575.873 kb on + strand, within ABIE41_RS07710at 1575.910 kb on + strand, within ABIE41_RS07710at 1575.910 kb on + strand, within ABIE41_RS07710at 1575.910 kb on + strand, within ABIE41_RS07710at 1575.911 kb on - strand, within ABIE41_RS07710at 1576.027 kb on + strand, within ABIE41_RS07710at 1576.027 kb on + strand, within ABIE41_RS07710at 1576.027 kb on + strand, within ABIE41_RS07710at 1576.027 kb on + strand, within ABIE41_RS07710at 1576.027 kb on + strand, within ABIE41_RS07710at 1576.027 kb on + strand, within ABIE41_RS07710at 1576.028 kb on - strand, within ABIE41_RS07710at 1576.165 kb on + strandat 1576.165 kb on + strandat 1576.392 kb on + strandat 1576.392 kb on + strandat 1576.392 kb on + strandat 1576.393 kb on - strandat 1576.393 kb on - strandat 1576.393 kb on - strandat 1576.393 kb on - strandat 1576.393 kb on - strandat 1576.436 kb on + strand, within ABIE41_RS07715at 1576.437 kb on + strand, within ABIE41_RS07715at 1576.437 kb on + strand, within ABIE41_RS07715at 1576.437 kb on + strand, within ABIE41_RS07715at 1576.437 kb on + strand, within ABIE41_RS07715at 1576.437 kb on + strand, within ABIE41_RS07715at 1576.437 kb on + strand, within ABIE41_RS07715at 1576.437 kb on + strand, within ABIE41_RS07715at 1576.438 kb on - strand, within ABIE41_RS07715at 1576.438 kb on - strand, within ABIE41_RS07715at 1576.438 kb on - strand, within ABIE41_RS07715at 1576.438 kb on - strand, within ABIE41_RS07715at 1576.530 kb on + strand, within ABIE41_RS07715at 1576.567 kb on - strand, within ABIE41_RS07715at 1576.567 kb on - strand, within ABIE41_RS07715at 1576.567 kb on - strand, within ABIE41_RS07715at 1576.731 kb on + strand, within ABIE41_RS07715at 1576.731 kb on + strand, within ABIE41_RS07715at 1576.732 kb on - strand, within ABIE41_RS07715at 1576.732 kb on - strand, within ABIE41_RS07715at 1576.733 kb on - strand, within ABIE41_RS07715at 1576.869 kb on + strand, within ABIE41_RS07715at 1576.869 kb on + strand, within ABIE41_RS07715at 1576.869 kb on + strand, within ABIE41_RS07715at 1576.869 kb on + strand, within ABIE41_RS07715at 1576.869 kb on + strand, within ABIE41_RS07715at 1576.869 kb on + strand, within ABIE41_RS07715at 1576.869 kb on + strand, within ABIE41_RS07715at 1576.869 kb on + strand, within ABIE41_RS07715at 1576.869 kb on + strand, within ABIE41_RS07715at 1576.870 kb on - strand, within ABIE41_RS07715at 1576.870 kb on - strand, within ABIE41_RS07715at 1576.870 kb on - strand, within ABIE41_RS07715at 1576.870 kb on - strand, within ABIE41_RS07715at 1576.873 kb on - strand, within ABIE41_RS07715at 1576.881 kb on + strand, within ABIE41_RS07715at 1576.884 kb on + strand, within ABIE41_RS07715at 1576.885 kb on - strand, within ABIE41_RS07715at 1576.885 kb on - strand, within ABIE41_RS07715at 1576.974 kb on + strand, within ABIE41_RS07715at 1576.974 kb on + strand, within ABIE41_RS07715at 1576.974 kb on + strand, within ABIE41_RS07715at 1576.974 kb on + strand, within ABIE41_RS07715at 1576.974 kb on + strand, within ABIE41_RS07715at 1576.974 kb on + strand, within ABIE41_RS07715at 1576.974 kb on + strand, within ABIE41_RS07715at 1576.974 kb on + strand, within ABIE41_RS07715at 1576.974 kb on + strand, within ABIE41_RS07715at 1576.974 kb on + strand, within ABIE41_RS07715at 1576.974 kb on + strand, within ABIE41_RS07715at 1576.974 kb on + strand, within ABIE41_RS07715at 1576.974 kb on + strand, within ABIE41_RS07715at 1576.975 kb on - strand, within ABIE41_RS07715at 1576.975 kb on - strand, within ABIE41_RS07715at 1576.975 kb on - strand, within ABIE41_RS07715at 1576.975 kb on - strand, within ABIE41_RS07715at 1576.975 kb on - strand, within ABIE41_RS07715at 1577.026 kb on - strand, within ABIE41_RS07715at 1577.076 kb on + strand, within ABIE41_RS07715at 1577.076 kb on + strand, within ABIE41_RS07715at 1577.077 kb on - strand, within ABIE41_RS07715at 1577.077 kb on - strand, within ABIE41_RS07715at 1577.077 kb on - strand, within ABIE41_RS07715at 1577.077 kb on - strand, within ABIE41_RS07715at 1577.094 kb on + strand, within ABIE41_RS07715at 1577.094 kb on + strand, within ABIE41_RS07715at 1577.094 kb on + strand, within ABIE41_RS07715at 1577.155 kb on - strand, within ABIE41_RS07715at 1577.817 kb on + strand, within ABIE41_RS07720at 1578.216 kb on + strandat 1578.216 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM
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1,575,451 + ABIE41_RS07710 0.13 -1.5
1,575,557 - ABIE41_RS07710 0.25 -0.1
1,575,557 - ABIE41_RS07710 0.25 +0.1
1,575,557 - ABIE41_RS07710 0.25 -0.1
1,575,873 + ABIE41_RS07710 0.61 -0.4
1,575,873 + ABIE41_RS07710 0.61 +3.9
1,575,873 + ABIE41_RS07710 0.61 +0.2
1,575,873 + ABIE41_RS07710 0.61 +0.6
1,575,910 + ABIE41_RS07710 0.65 +0.2
1,575,910 + ABIE41_RS07710 0.65 +0.1
1,575,910 + ABIE41_RS07710 0.65 +0.5
1,575,911 - ABIE41_RS07710 0.65 +0.1
1,576,027 + ABIE41_RS07710 0.78 +0.1
1,576,027 + ABIE41_RS07710 0.78 +0.8
1,576,027 + ABIE41_RS07710 0.78 +0.8
1,576,027 + ABIE41_RS07710 0.78 -0.9
1,576,027 + ABIE41_RS07710 0.78 -0.6
1,576,027 + ABIE41_RS07710 0.78 +1.8
1,576,028 - ABIE41_RS07710 0.78 +0.0
1,576,165 + -3.3
1,576,165 + -0.6
1,576,392 + +0.5
1,576,392 + +0.7
1,576,392 + +0.3
1,576,393 - +2.9
1,576,393 - +0.6
1,576,393 - +0.8
1,576,393 - -0.6
1,576,393 - +0.7
1,576,436 + ABIE41_RS07715 0.11 -0.4
1,576,437 + ABIE41_RS07715 0.12 +0.1
1,576,437 + ABIE41_RS07715 0.12 +1.7
1,576,437 + ABIE41_RS07715 0.12 -0.0
1,576,437 + ABIE41_RS07715 0.12 -0.2
1,576,437 + ABIE41_RS07715 0.12 +1.0
1,576,437 + ABIE41_RS07715 0.12 -0.4
1,576,437 + ABIE41_RS07715 0.12 -0.1
1,576,438 - ABIE41_RS07715 0.12 -0.2
1,576,438 - ABIE41_RS07715 0.12 +0.5
1,576,438 - ABIE41_RS07715 0.12 +0.2
1,576,438 - ABIE41_RS07715 0.12 +0.3
1,576,530 + ABIE41_RS07715 0.22 -0.5
1,576,567 - ABIE41_RS07715 0.26 +0.2
1,576,567 - ABIE41_RS07715 0.26 +0.5
1,576,567 - ABIE41_RS07715 0.26 +0.3
1,576,731 + ABIE41_RS07715 0.44 -0.4
1,576,731 + ABIE41_RS07715 0.44 +1.6
1,576,732 - ABIE41_RS07715 0.44 +0.4
1,576,732 - ABIE41_RS07715 0.44 +0.5
1,576,733 - ABIE41_RS07715 0.44 +0.3
1,576,869 + ABIE41_RS07715 0.59 -0.6
1,576,869 + ABIE41_RS07715 0.59 +0.6
1,576,869 + ABIE41_RS07715 0.59 +0.4
1,576,869 + ABIE41_RS07715 0.59 +0.4
1,576,869 + ABIE41_RS07715 0.59 +0.9
1,576,869 + ABIE41_RS07715 0.59 +0.6
1,576,869 + ABIE41_RS07715 0.59 +0.6
1,576,869 + ABIE41_RS07715 0.59 -0.5
1,576,869 + ABIE41_RS07715 0.59 -1.4
1,576,870 - ABIE41_RS07715 0.59 +0.7
1,576,870 - ABIE41_RS07715 0.59 +0.8
1,576,870 - ABIE41_RS07715 0.59 +1.1
1,576,870 - ABIE41_RS07715 0.59 -0.4
1,576,873 - ABIE41_RS07715 0.59 +0.3
1,576,881 + ABIE41_RS07715 0.60 +0.4
1,576,884 + ABIE41_RS07715 0.60 -0.1
1,576,885 - ABIE41_RS07715 0.60 -0.7
1,576,885 - ABIE41_RS07715 0.60 -0.9
1,576,974 + ABIE41_RS07715 0.70 -1.2
1,576,974 + ABIE41_RS07715 0.70 -1.4
1,576,974 + ABIE41_RS07715 0.70 -2.4
1,576,974 + ABIE41_RS07715 0.70 -0.5
1,576,974 + ABIE41_RS07715 0.70 -0.1
1,576,974 + ABIE41_RS07715 0.70 +1.0
1,576,974 + ABIE41_RS07715 0.70 -0.1
1,576,974 + ABIE41_RS07715 0.70 +1.1
1,576,974 + ABIE41_RS07715 0.70 +0.2
1,576,974 + ABIE41_RS07715 0.70 -1.1
1,576,974 + ABIE41_RS07715 0.70 +0.9
1,576,974 + ABIE41_RS07715 0.70 +0.5
1,576,974 + ABIE41_RS07715 0.70 -0.6
1,576,975 - ABIE41_RS07715 0.70 -0.2
1,576,975 - ABIE41_RS07715 0.70 -0.6
1,576,975 - ABIE41_RS07715 0.70 -2.2
1,576,975 - ABIE41_RS07715 0.70 +0.8
1,576,975 - ABIE41_RS07715 0.70 -1.0
1,577,026 - ABIE41_RS07715 0.76 +0.6
1,577,076 + ABIE41_RS07715 0.81 -2.1
1,577,076 + ABIE41_RS07715 0.81 -0.7
1,577,077 - ABIE41_RS07715 0.81 +0.5
1,577,077 - ABIE41_RS07715 0.81 -2.4
1,577,077 - ABIE41_RS07715 0.81 +0.6
1,577,077 - ABIE41_RS07715 0.81 +0.5
1,577,094 + ABIE41_RS07715 0.83 -0.8
1,577,094 + ABIE41_RS07715 0.83 +0.8
1,577,094 + ABIE41_RS07715 0.83 +1.0
1,577,155 - ABIE41_RS07715 0.90 +0.0
1,577,817 + ABIE41_RS07720 0.62 -0.3
1,578,216 + -0.7
1,578,216 + +0.4

Or see this region's nucleotide sequence