Experiment: R2A with 2-pentyl-furan 21.3684 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS03455 and ABIE41_RS03460 overlap by 1 nucleotides ABIE41_RS03460 and ABIE41_RS03465 are separated by 7 nucleotides ABIE41_RS03465 and ABIE41_RS03470 are separated by 111 nucleotides ABIE41_RS03470 and ABIE41_RS03475 are separated by 36 nucleotides
ABIE41_RS03455: ABIE41_RS03455 - sn-glycerol-3-phosphate ABC transporter permease UgpA, at 718,663 to 719,544
_RS03455
ABIE41_RS03460: ABIE41_RS03460 - sn-glycerol-3-phosphate ABC transporter permease UgpE, at 719,544 to 720,392
_RS03460
ABIE41_RS03465: ABIE41_RS03465 - sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 720,400 to 721,479
_RS03465
ABIE41_RS03470: ABIE41_RS03470 - thioredoxin family protein, at 721,591 to 722,232
_RS03470
ABIE41_RS03475: ABIE41_RS03475 - protein-disulfide reductase DsbD domain-containing protein, at 722,269 to 724,425
_RS03475
Position (kb) 720
721
722 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 719.410 kb on + strand, within ABIE41_RS03455 at 719.410 kb on + strand, within ABIE41_RS03455 at 719.410 kb on + strand, within ABIE41_RS03455 at 719.410 kb on + strand, within ABIE41_RS03455 at 719.411 kb on - strand, within ABIE41_RS03455 at 719.411 kb on - strand, within ABIE41_RS03455 at 719.484 kb on + strand at 719.539 kb on + strand at 719.539 kb on + strand at 719.539 kb on + strand at 719.539 kb on + strand at 719.539 kb on + strand at 719.539 kb on + strand at 719.540 kb on - strand at 719.540 kb on - strand at 719.540 kb on - strand at 719.540 kb on - strand at 719.540 kb on - strand at 719.580 kb on + strand at 719.580 kb on + strand at 719.581 kb on - strand at 719.581 kb on - strand at 719.581 kb on - strand at 719.689 kb on - strand, within ABIE41_RS03460 at 719.715 kb on + strand, within ABIE41_RS03460 at 719.715 kb on + strand, within ABIE41_RS03460 at 719.715 kb on + strand, within ABIE41_RS03460 at 719.715 kb on + strand, within ABIE41_RS03460 at 719.716 kb on - strand, within ABIE41_RS03460 at 719.716 kb on - strand, within ABIE41_RS03460 at 719.716 kb on - strand, within ABIE41_RS03460 at 719.716 kb on - strand, within ABIE41_RS03460 at 719.719 kb on - strand, within ABIE41_RS03460 at 719.844 kb on + strand, within ABIE41_RS03460 at 719.844 kb on + strand, within ABIE41_RS03460 at 719.844 kb on + strand, within ABIE41_RS03460 at 719.845 kb on - strand, within ABIE41_RS03460 at 719.856 kb on + strand, within ABIE41_RS03460 at 719.856 kb on + strand, within ABIE41_RS03460 at 719.856 kb on + strand, within ABIE41_RS03460 at 719.857 kb on - strand, within ABIE41_RS03460 at 719.857 kb on - strand, within ABIE41_RS03460 at 719.857 kb on - strand, within ABIE41_RS03460 at 719.857 kb on - strand, within ABIE41_RS03460 at 719.979 kb on + strand, within ABIE41_RS03460 at 719.979 kb on + strand, within ABIE41_RS03460 at 719.979 kb on + strand, within ABIE41_RS03460 at 719.979 kb on + strand, within ABIE41_RS03460 at 719.979 kb on + strand, within ABIE41_RS03460 at 719.979 kb on + strand, within ABIE41_RS03460 at 719.979 kb on + strand, within ABIE41_RS03460 at 719.979 kb on + strand, within ABIE41_RS03460 at 719.979 kb on + strand, within ABIE41_RS03460 at 719.980 kb on - strand, within ABIE41_RS03460 at 719.980 kb on - strand, within ABIE41_RS03460 at 719.980 kb on - strand, within ABIE41_RS03460 at 719.980 kb on - strand, within ABIE41_RS03460 at 719.980 kb on - strand, within ABIE41_RS03460 at 719.980 kb on - strand, within ABIE41_RS03460 at 719.980 kb on - strand, within ABIE41_RS03460 at 719.980 kb on - strand, within ABIE41_RS03460 at 719.980 kb on - strand, within ABIE41_RS03460 at 720.174 kb on + strand, within ABIE41_RS03460 at 720.174 kb on + strand, within ABIE41_RS03460 at 720.174 kb on + strand, within ABIE41_RS03460 at 720.175 kb on - strand, within ABIE41_RS03460 at 720.175 kb on - strand, within ABIE41_RS03460 at 720.189 kb on + strand, within ABIE41_RS03460 at 720.190 kb on - strand, within ABIE41_RS03460 at 720.190 kb on - strand, within ABIE41_RS03460 at 720.390 kb on + strand at 720.390 kb on + strand at 720.390 kb on + strand at 720.391 kb on - strand at 720.391 kb on - strand at 720.392 kb on - strand at 720.411 kb on + strand at 720.412 kb on - strand at 720.412 kb on - strand at 720.412 kb on - strand at 720.436 kb on + strand at 720.437 kb on - strand at 720.437 kb on - strand at 720.661 kb on + strand, within ABIE41_RS03465 at 720.661 kb on + strand, within ABIE41_RS03465 at 720.661 kb on + strand, within ABIE41_RS03465 at 720.669 kb on + strand, within ABIE41_RS03465 at 720.669 kb on + strand, within ABIE41_RS03465 at 720.669 kb on + strand, within ABIE41_RS03465 at 720.670 kb on - strand, within ABIE41_RS03465 at 720.670 kb on - strand, within ABIE41_RS03465 at 720.670 kb on - strand, within ABIE41_RS03465 at 720.670 kb on - strand, within ABIE41_RS03465 at 720.670 kb on - strand, within ABIE41_RS03465 at 720.670 kb on - strand, within ABIE41_RS03465 at 720.679 kb on + strand, within ABIE41_RS03465 at 720.679 kb on + strand, within ABIE41_RS03465 at 720.694 kb on + strand, within ABIE41_RS03465 at 720.695 kb on - strand, within ABIE41_RS03465 at 720.695 kb on - strand, within ABIE41_RS03465 at 720.695 kb on - strand, within ABIE41_RS03465 at 720.695 kb on - strand, within ABIE41_RS03465 at 720.967 kb on + strand, within ABIE41_RS03465 at 720.967 kb on + strand, within ABIE41_RS03465 at 720.967 kb on + strand, within ABIE41_RS03465 at 720.967 kb on + strand, within ABIE41_RS03465 at 720.968 kb on - strand, within ABIE41_RS03465 at 720.968 kb on - strand, within ABIE41_RS03465 at 721.066 kb on + strand, within ABIE41_RS03465 at 721.066 kb on + strand, within ABIE41_RS03465 at 721.067 kb on - strand, within ABIE41_RS03465 at 721.067 kb on - strand, within ABIE41_RS03465 at 721.067 kb on - strand, within ABIE41_RS03465 at 721.067 kb on - strand, within ABIE41_RS03465 at 721.067 kb on - strand, within ABIE41_RS03465 at 721.091 kb on + strand, within ABIE41_RS03465 at 721.092 kb on - strand, within ABIE41_RS03465 at 721.092 kb on - strand, within ABIE41_RS03465 at 721.625 kb on + strand at 721.625 kb on + strand at 721.625 kb on + strand at 721.626 kb on - strand at 721.626 kb on - strand at 721.626 kb on - strand at 721.665 kb on + strand, within ABIE41_RS03470 at 721.666 kb on - strand, within ABIE41_RS03470 at 721.691 kb on + strand, within ABIE41_RS03470 at 721.691 kb on + strand, within ABIE41_RS03470 at 721.691 kb on + strand, within ABIE41_RS03470 at 721.691 kb on + strand, within ABIE41_RS03470 at 721.691 kb on + strand, within ABIE41_RS03470 at 721.691 kb on + strand, within ABIE41_RS03470 at 721.691 kb on + strand, within ABIE41_RS03470 at 721.691 kb on + strand, within ABIE41_RS03470 at 721.691 kb on + strand, within ABIE41_RS03470 at 721.692 kb on - strand, within ABIE41_RS03470 at 721.692 kb on - strand, within ABIE41_RS03470 at 721.692 kb on - strand, within ABIE41_RS03470 at 721.692 kb on - strand, within ABIE41_RS03470 at 721.692 kb on - strand, within ABIE41_RS03470 at 721.692 kb on - strand, within ABIE41_RS03470 at 721.692 kb on - strand, within ABIE41_RS03470 at 721.752 kb on + strand, within ABIE41_RS03470 at 721.752 kb on + strand, within ABIE41_RS03470 at 721.752 kb on + strand, within ABIE41_RS03470 at 721.753 kb on - strand, within ABIE41_RS03470 at 721.754 kb on + strand, within ABIE41_RS03470 at 721.754 kb on + strand, within ABIE41_RS03470 at 721.755 kb on - strand, within ABIE41_RS03470 at 721.755 kb on - strand, within ABIE41_RS03470 at 721.755 kb on - strand, within ABIE41_RS03470 at 721.755 kb on - strand, within ABIE41_RS03470 at 721.784 kb on + strand, within ABIE41_RS03470 at 721.784 kb on + strand, within ABIE41_RS03470 at 721.784 kb on + strand, within ABIE41_RS03470 at 721.784 kb on + strand, within ABIE41_RS03470 at 721.784 kb on + strand, within ABIE41_RS03470 at 721.784 kb on + strand, within ABIE41_RS03470 at 721.784 kb on + strand, within ABIE41_RS03470 at 721.784 kb on + strand, within ABIE41_RS03470 at 721.784 kb on + strand, within ABIE41_RS03470 at 721.784 kb on + strand, within ABIE41_RS03470 at 721.784 kb on + strand, within ABIE41_RS03470 at 721.784 kb on + strand, within ABIE41_RS03470 at 721.785 kb on - strand, within ABIE41_RS03470 at 721.785 kb on - strand, within ABIE41_RS03470 at 721.785 kb on - strand, within ABIE41_RS03470 at 721.785 kb on - strand, within ABIE41_RS03470 at 721.785 kb on - strand, within ABIE41_RS03470 at 721.785 kb on - strand, within ABIE41_RS03470 at 721.785 kb on - strand, within ABIE41_RS03470 at 721.785 kb on - strand, within ABIE41_RS03470 at 722.003 kb on + strand, within ABIE41_RS03470 at 722.003 kb on + strand, within ABIE41_RS03470 at 722.003 kb on + strand, within ABIE41_RS03470 at 722.004 kb on - strand, within ABIE41_RS03470 at 722.004 kb on - strand, within ABIE41_RS03470 at 722.004 kb on - strand, within ABIE41_RS03470 at 722.018 kb on + strand, within ABIE41_RS03470 at 722.018 kb on + strand, within ABIE41_RS03470 at 722.019 kb on - strand, within ABIE41_RS03470 at 722.019 kb on - strand, within ABIE41_RS03470 at 722.019 kb on - strand, within ABIE41_RS03470 at 722.019 kb on - strand, within ABIE41_RS03470 at 722.019 kb on - strand, within ABIE41_RS03470 at 722.019 kb on - strand, within ABIE41_RS03470 at 722.019 kb on - strand, within ABIE41_RS03470 at 722.019 kb on - strand, within ABIE41_RS03470
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM remove 719,410 + ABIE41_RS03455 0.85 +0.3 719,410 + ABIE41_RS03455 0.85 -1.6 719,410 + ABIE41_RS03455 0.85 -0.8 719,410 + ABIE41_RS03455 0.85 -0.9 719,411 - ABIE41_RS03455 0.85 +0.6 719,411 - ABIE41_RS03455 0.85 -1.1 719,484 + -1.6 719,539 + -1.1 719,539 + -0.8 719,539 + -0.7 719,539 + +1.1 719,539 + +0.1 719,539 + +0.2 719,540 - +4.5 719,540 - +1.1 719,540 - -1.2 719,540 - +0.2 719,540 - +0.4 719,580 + +0.7 719,580 + -0.3 719,581 - -0.1 719,581 - -0.4 719,581 - -0.6 719,689 - ABIE41_RS03460 0.17 -0.1 719,715 + ABIE41_RS03460 0.20 -0.9 719,715 + ABIE41_RS03460 0.20 -0.0 719,715 + ABIE41_RS03460 0.20 -0.5 719,715 + ABIE41_RS03460 0.20 +4.2 719,716 - ABIE41_RS03460 0.20 -0.3 719,716 - ABIE41_RS03460 0.20 +0.4 719,716 - ABIE41_RS03460 0.20 +1.9 719,716 - ABIE41_RS03460 0.20 -0.7 719,719 - ABIE41_RS03460 0.21 +0.5 719,844 + ABIE41_RS03460 0.35 -0.4 719,844 + ABIE41_RS03460 0.35 +0.5 719,844 + ABIE41_RS03460 0.35 +0.1 719,845 - ABIE41_RS03460 0.35 +0.4 719,856 + ABIE41_RS03460 0.37 -0.5 719,856 + ABIE41_RS03460 0.37 -0.4 719,856 + ABIE41_RS03460 0.37 +0.3 719,857 - ABIE41_RS03460 0.37 -0.4 719,857 - ABIE41_RS03460 0.37 -0.4 719,857 - ABIE41_RS03460 0.37 +2.0 719,857 - ABIE41_RS03460 0.37 -0.2 719,979 + ABIE41_RS03460 0.51 +0.3 719,979 + ABIE41_RS03460 0.51 -0.5 719,979 + ABIE41_RS03460 0.51 +1.5 719,979 + ABIE41_RS03460 0.51 -1.3 719,979 + ABIE41_RS03460 0.51 -1.6 719,979 + ABIE41_RS03460 0.51 -0.4 719,979 + ABIE41_RS03460 0.51 -0.0 719,979 + ABIE41_RS03460 0.51 -0.2 719,979 + ABIE41_RS03460 0.51 +0.6 719,980 - ABIE41_RS03460 0.51 -0.4 719,980 - ABIE41_RS03460 0.51 -0.8 719,980 - ABIE41_RS03460 0.51 +0.9 719,980 - ABIE41_RS03460 0.51 +0.2 719,980 - ABIE41_RS03460 0.51 +0.3 719,980 - ABIE41_RS03460 0.51 +1.9 719,980 - ABIE41_RS03460 0.51 +0.2 719,980 - ABIE41_RS03460 0.51 -1.7 719,980 - ABIE41_RS03460 0.51 +2.7 720,174 + ABIE41_RS03460 0.74 -2.0 720,174 + ABIE41_RS03460 0.74 -0.9 720,174 + ABIE41_RS03460 0.74 +1.3 720,175 - ABIE41_RS03460 0.74 -0.9 720,175 - ABIE41_RS03460 0.74 +0.2 720,189 + ABIE41_RS03460 0.76 -0.0 720,190 - ABIE41_RS03460 0.76 -0.1 720,190 - ABIE41_RS03460 0.76 +0.8 720,390 + +0.2 720,390 + -0.0 720,390 + +0.5 720,391 - +0.2 720,391 - +0.9 720,392 - -0.7 720,411 + -0.1 720,412 - +0.5 720,412 - +1.5 720,412 - -0.5 720,436 + -0.1 720,437 - -0.5 720,437 - -0.5 720,661 + ABIE41_RS03465 0.24 +0.2 720,661 + ABIE41_RS03465 0.24 -0.5 720,661 + ABIE41_RS03465 0.24 -1.7 720,669 + ABIE41_RS03465 0.25 +1.2 720,669 + ABIE41_RS03465 0.25 +1.1 720,669 + ABIE41_RS03465 0.25 -0.4 720,670 - ABIE41_RS03465 0.25 -0.4 720,670 - ABIE41_RS03465 0.25 -0.2 720,670 - ABIE41_RS03465 0.25 +0.0 720,670 - ABIE41_RS03465 0.25 -0.3 720,670 - ABIE41_RS03465 0.25 -1.1 720,670 - ABIE41_RS03465 0.25 -0.2 720,679 + ABIE41_RS03465 0.26 -0.2 720,679 + ABIE41_RS03465 0.26 +0.1 720,694 + ABIE41_RS03465 0.27 +0.2 720,695 - ABIE41_RS03465 0.27 -0.3 720,695 - ABIE41_RS03465 0.27 -3.7 720,695 - ABIE41_RS03465 0.27 +0.3 720,695 - ABIE41_RS03465 0.27 -3.0 720,967 + ABIE41_RS03465 0.53 -0.1 720,967 + ABIE41_RS03465 0.53 -0.5 720,967 + ABIE41_RS03465 0.53 +1.3 720,967 + ABIE41_RS03465 0.53 -3.0 720,968 - ABIE41_RS03465 0.53 -1.1 720,968 - ABIE41_RS03465 0.53 +1.2 721,066 + ABIE41_RS03465 0.62 -0.4 721,066 + ABIE41_RS03465 0.62 +0.3 721,067 - ABIE41_RS03465 0.62 +1.3 721,067 - ABIE41_RS03465 0.62 -1.5 721,067 - ABIE41_RS03465 0.62 +0.3 721,067 - ABIE41_RS03465 0.62 +0.5 721,067 - ABIE41_RS03465 0.62 +0.1 721,091 + ABIE41_RS03465 0.64 -0.2 721,092 - ABIE41_RS03465 0.64 -0.1 721,092 - ABIE41_RS03465 0.64 -0.3 721,625 + +2.3 721,625 + +0.6 721,625 + -0.7 721,626 - -0.1 721,626 - +0.3 721,626 - -0.2 721,665 + ABIE41_RS03470 0.12 -0.6 721,666 - ABIE41_RS03470 0.12 -0.9 721,691 + ABIE41_RS03470 0.16 +0.5 721,691 + ABIE41_RS03470 0.16 -0.2 721,691 + ABIE41_RS03470 0.16 -0.7 721,691 + ABIE41_RS03470 0.16 -0.6 721,691 + ABIE41_RS03470 0.16 -0.5 721,691 + ABIE41_RS03470 0.16 +0.6 721,691 + ABIE41_RS03470 0.16 +0.3 721,691 + ABIE41_RS03470 0.16 +1.0 721,691 + ABIE41_RS03470 0.16 +0.7 721,692 - ABIE41_RS03470 0.16 +0.0 721,692 - ABIE41_RS03470 0.16 -0.7 721,692 - ABIE41_RS03470 0.16 -0.3 721,692 - ABIE41_RS03470 0.16 +0.1 721,692 - ABIE41_RS03470 0.16 +1.9 721,692 - ABIE41_RS03470 0.16 -0.5 721,692 - ABIE41_RS03470 0.16 -1.3 721,752 + ABIE41_RS03470 0.25 +0.9 721,752 + ABIE41_RS03470 0.25 -0.2 721,752 + ABIE41_RS03470 0.25 +0.9 721,753 - ABIE41_RS03470 0.25 -0.7 721,754 + ABIE41_RS03470 0.25 +0.5 721,754 + ABIE41_RS03470 0.25 -0.5 721,755 - ABIE41_RS03470 0.26 +1.9 721,755 - ABIE41_RS03470 0.26 +1.2 721,755 - ABIE41_RS03470 0.26 +0.6 721,755 - ABIE41_RS03470 0.26 -1.4 721,784 + ABIE41_RS03470 0.30 +0.2 721,784 + ABIE41_RS03470 0.30 +0.4 721,784 + ABIE41_RS03470 0.30 -0.2 721,784 + ABIE41_RS03470 0.30 -0.8 721,784 + ABIE41_RS03470 0.30 -0.7 721,784 + ABIE41_RS03470 0.30 +0.6 721,784 + ABIE41_RS03470 0.30 -0.3 721,784 + ABIE41_RS03470 0.30 -0.7 721,784 + ABIE41_RS03470 0.30 -0.4 721,784 + ABIE41_RS03470 0.30 +0.7 721,784 + ABIE41_RS03470 0.30 +2.1 721,784 + ABIE41_RS03470 0.30 +0.1 721,785 - ABIE41_RS03470 0.30 -0.5 721,785 - ABIE41_RS03470 0.30 +2.7 721,785 - ABIE41_RS03470 0.30 +1.6 721,785 - ABIE41_RS03470 0.30 +0.5 721,785 - ABIE41_RS03470 0.30 -0.2 721,785 - ABIE41_RS03470 0.30 +1.6 721,785 - ABIE41_RS03470 0.30 -0.1 721,785 - ABIE41_RS03470 0.30 -0.5 722,003 + ABIE41_RS03470 0.64 -1.0 722,003 + ABIE41_RS03470 0.64 -0.7 722,003 + ABIE41_RS03470 0.64 +0.0 722,004 - ABIE41_RS03470 0.64 +0.3 722,004 - ABIE41_RS03470 0.64 +0.1 722,004 - ABIE41_RS03470 0.64 +0.1 722,018 + ABIE41_RS03470 0.67 -1.1 722,018 + ABIE41_RS03470 0.67 -0.1 722,019 - ABIE41_RS03470 0.67 +2.7 722,019 - ABIE41_RS03470 0.67 +0.6 722,019 - ABIE41_RS03470 0.67 +0.9 722,019 - ABIE41_RS03470 0.67 +0.7 722,019 - ABIE41_RS03470 0.67 -0.5 722,019 - ABIE41_RS03470 0.67 -0.9 722,019 - ABIE41_RS03470 0.67 -0.0 722,019 - ABIE41_RS03470 0.67 -0.3
Or see this region's nucleotide sequence