Experiment: R2A with 2-pentyl-furan 21.3684 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS02670 and ABIE41_RS02675 are separated by 129 nucleotides ABIE41_RS02675 and ABIE41_RS02680 are separated by 100 nucleotides
ABIE41_RS02670: ABIE41_RS02670 - DUF2470 domain-containing protein, at 541,066 to 541,875
_RS02670
ABIE41_RS02675: ABIE41_RS02675 - response regulator transcription factor, at 542,005 to 542,706
_RS02675
ABIE41_RS02680: ABIE41_RS02680 - sensor histidine kinase, at 542,807 to 544,606
_RS02680
Position (kb) 542
543 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 541.054 kb on + strand at 541.068 kb on - strand at 541.250 kb on + strand, within ABIE41_RS02670 at 541.367 kb on + strand, within ABIE41_RS02670 at 541.368 kb on - strand, within ABIE41_RS02670 at 541.368 kb on - strand, within ABIE41_RS02670 at 541.368 kb on - strand, within ABIE41_RS02670 at 541.368 kb on - strand, within ABIE41_RS02670 at 541.368 kb on - strand, within ABIE41_RS02670 at 541.445 kb on + strand, within ABIE41_RS02670 at 541.445 kb on + strand, within ABIE41_RS02670 at 541.791 kb on + strand, within ABIE41_RS02670 at 541.891 kb on - strand at 541.901 kb on + strand at 541.902 kb on - strand at 541.902 kb on - strand at 541.902 kb on - strand at 541.905 kb on - strand at 541.995 kb on + strand at 542.004 kb on + strand at 542.004 kb on + strand at 542.004 kb on + strand at 542.004 kb on + strand at 542.004 kb on + strand at 542.004 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM remove 541,054 + -0.9 541,068 - -0.4 541,250 + ABIE41_RS02670 0.23 -1.2 541,367 + ABIE41_RS02670 0.37 +0.9 541,368 - ABIE41_RS02670 0.37 +0.5 541,368 - ABIE41_RS02670 0.37 -1.0 541,368 - ABIE41_RS02670 0.37 +2.2 541,368 - ABIE41_RS02670 0.37 -1.0 541,368 - ABIE41_RS02670 0.37 +0.2 541,445 + ABIE41_RS02670 0.47 +0.3 541,445 + ABIE41_RS02670 0.47 +1.3 541,791 + ABIE41_RS02670 0.90 -1.3 541,891 - -1.6 541,901 + -0.8 541,902 - -1.1 541,902 - -1.3 541,902 - +1.1 541,905 - -2.0 541,995 + +0.2 542,004 + -2.1 542,004 + -1.3 542,004 + -3.3 542,004 + -1.5 542,004 + -2.0 542,004 + -0.8
Or see this region's nucleotide sequence