Experiment: R2A with 2-pentyl-furan 21.3684 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS02300 and ABIE41_RS02305 are separated by 382 nucleotides ABIE41_RS02305 and ABIE41_RS02310 are separated by 1 nucleotides
ABIE41_RS02300: ABIE41_RS02300 - isochorismatase family cysteine hydrolase, at 460,099 to 460,806
_RS02300
ABIE41_RS02305: ABIE41_RS02305 - hypothetical protein, at 461,189 to 461,398
_RS02305
ABIE41_RS02310: ABIE41_RS02310 - amidase, at 461,400 to 462,479
_RS02310
Position (kb) 461
462 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 460.259 kb on + strand, within ABIE41_RS02300 at 460.259 kb on + strand, within ABIE41_RS02300 at 460.259 kb on + strand, within ABIE41_RS02300 at 460.259 kb on + strand, within ABIE41_RS02300 at 460.259 kb on + strand, within ABIE41_RS02300 at 460.260 kb on - strand, within ABIE41_RS02300 at 460.260 kb on - strand, within ABIE41_RS02300 at 460.260 kb on - strand, within ABIE41_RS02300 at 460.260 kb on - strand, within ABIE41_RS02300 at 460.260 kb on - strand, within ABIE41_RS02300 at 460.260 kb on - strand, within ABIE41_RS02300 at 460.260 kb on - strand, within ABIE41_RS02300 at 460.260 kb on - strand, within ABIE41_RS02300 at 460.445 kb on + strand, within ABIE41_RS02300 at 460.445 kb on + strand, within ABIE41_RS02300 at 460.446 kb on - strand, within ABIE41_RS02300 at 460.574 kb on + strand, within ABIE41_RS02300 at 460.575 kb on - strand, within ABIE41_RS02300 at 460.575 kb on - strand, within ABIE41_RS02300 at 460.575 kb on - strand, within ABIE41_RS02300 at 460.575 kb on - strand, within ABIE41_RS02300 at 460.646 kb on + strand, within ABIE41_RS02300 at 460.647 kb on - strand, within ABIE41_RS02300 at 460.750 kb on - strand at 460.782 kb on - strand at 460.782 kb on - strand at 461.003 kb on + strand at 461.003 kb on + strand at 461.004 kb on - strand at 461.015 kb on + strand at 461.015 kb on + strand at 461.015 kb on + strand at 461.015 kb on + strand at 461.016 kb on - strand at 461.295 kb on - strand, within ABIE41_RS02305 at 461.647 kb on - strand, within ABIE41_RS02310 at 461.647 kb on - strand, within ABIE41_RS02310 at 461.647 kb on - strand, within ABIE41_RS02310 at 461.664 kb on + strand, within ABIE41_RS02310 at 461.664 kb on + strand, within ABIE41_RS02310 at 461.664 kb on + strand, within ABIE41_RS02310 at 461.664 kb on + strand, within ABIE41_RS02310 at 461.664 kb on + strand, within ABIE41_RS02310 at 461.665 kb on - strand, within ABIE41_RS02310 at 461.665 kb on - strand, within ABIE41_RS02310 at 461.665 kb on - strand, within ABIE41_RS02310 at 461.665 kb on - strand, within ABIE41_RS02310 at 461.665 kb on - strand, within ABIE41_RS02310 at 462.003 kb on + strand, within ABIE41_RS02310 at 462.003 kb on + strand, within ABIE41_RS02310 at 462.003 kb on + strand, within ABIE41_RS02310 at 462.003 kb on + strand, within ABIE41_RS02310 at 462.004 kb on - strand, within ABIE41_RS02310 at 462.004 kb on - strand, within ABIE41_RS02310 at 462.042 kb on + strand, within ABIE41_RS02310 at 462.043 kb on - strand, within ABIE41_RS02310 at 462.043 kb on - strand, within ABIE41_RS02310 at 462.043 kb on - strand, within ABIE41_RS02310 at 462.043 kb on - strand, within ABIE41_RS02310 at 462.043 kb on - strand, within ABIE41_RS02310 at 462.043 kb on - strand, within ABIE41_RS02310 at 462.044 kb on + strand, within ABIE41_RS02310 at 462.044 kb on + strand, within ABIE41_RS02310 at 462.044 kb on + strand, within ABIE41_RS02310 at 462.045 kb on - strand, within ABIE41_RS02310 at 462.045 kb on - strand, within ABIE41_RS02310 at 462.045 kb on - strand, within ABIE41_RS02310 at 462.045 kb on - strand, within ABIE41_RS02310 at 462.330 kb on + strand, within ABIE41_RS02310 at 462.331 kb on - strand, within ABIE41_RS02310
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM remove 460,259 + ABIE41_RS02300 0.23 -1.2 460,259 + ABIE41_RS02300 0.23 -1.4 460,259 + ABIE41_RS02300 0.23 +0.2 460,259 + ABIE41_RS02300 0.23 -0.5 460,259 + ABIE41_RS02300 0.23 -0.2 460,260 - ABIE41_RS02300 0.23 +0.5 460,260 - ABIE41_RS02300 0.23 +1.9 460,260 - ABIE41_RS02300 0.23 -0.3 460,260 - ABIE41_RS02300 0.23 +1.8 460,260 - ABIE41_RS02300 0.23 +0.5 460,260 - ABIE41_RS02300 0.23 -0.3 460,260 - ABIE41_RS02300 0.23 -1.7 460,260 - ABIE41_RS02300 0.23 +0.2 460,445 + ABIE41_RS02300 0.49 -0.1 460,445 + ABIE41_RS02300 0.49 -1.6 460,446 - ABIE41_RS02300 0.49 -0.1 460,574 + ABIE41_RS02300 0.67 +0.1 460,575 - ABIE41_RS02300 0.67 +0.9 460,575 - ABIE41_RS02300 0.67 +0.6 460,575 - ABIE41_RS02300 0.67 +0.3 460,575 - ABIE41_RS02300 0.67 -0.1 460,646 + ABIE41_RS02300 0.77 -1.4 460,647 - ABIE41_RS02300 0.77 +1.4 460,750 - +1.3 460,782 - +1.8 460,782 - +0.1 461,003 + +0.0 461,003 + +0.3 461,004 - +0.5 461,015 + -1.0 461,015 + -0.0 461,015 + -0.0 461,015 + -0.4 461,016 - +0.3 461,295 - ABIE41_RS02305 0.50 -0.8 461,647 - ABIE41_RS02310 0.23 +0.8 461,647 - ABIE41_RS02310 0.23 -1.3 461,647 - ABIE41_RS02310 0.23 -1.7 461,664 + ABIE41_RS02310 0.24 +2.3 461,664 + ABIE41_RS02310 0.24 +0.2 461,664 + ABIE41_RS02310 0.24 +0.4 461,664 + ABIE41_RS02310 0.24 -0.2 461,664 + ABIE41_RS02310 0.24 +0.1 461,665 - ABIE41_RS02310 0.25 -0.0 461,665 - ABIE41_RS02310 0.25 -0.0 461,665 - ABIE41_RS02310 0.25 +0.5 461,665 - ABIE41_RS02310 0.25 -0.8 461,665 - ABIE41_RS02310 0.25 +0.5 462,003 + ABIE41_RS02310 0.56 -0.5 462,003 + ABIE41_RS02310 0.56 -1.7 462,003 + ABIE41_RS02310 0.56 +0.3 462,003 + ABIE41_RS02310 0.56 +0.7 462,004 - ABIE41_RS02310 0.56 -0.5 462,004 - ABIE41_RS02310 0.56 -2.6 462,042 + ABIE41_RS02310 0.59 -0.7 462,043 - ABIE41_RS02310 0.60 +0.1 462,043 - ABIE41_RS02310 0.60 +0.9 462,043 - ABIE41_RS02310 0.60 +0.3 462,043 - ABIE41_RS02310 0.60 -0.9 462,043 - ABIE41_RS02310 0.60 +0.6 462,043 - ABIE41_RS02310 0.60 +0.7 462,044 + ABIE41_RS02310 0.60 -1.7 462,044 + ABIE41_RS02310 0.60 -0.1 462,044 + ABIE41_RS02310 0.60 +0.9 462,045 - ABIE41_RS02310 0.60 +3.5 462,045 - ABIE41_RS02310 0.60 +0.0 462,045 - ABIE41_RS02310 0.60 +0.1 462,045 - ABIE41_RS02310 0.60 +0.8 462,330 + ABIE41_RS02310 0.86 -0.4 462,331 - ABIE41_RS02310 0.86 +1.1
Or see this region's nucleotide sequence