Experiment: R2A with 2-pentyl-furan 21.3684 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS01370 and ABIE41_RS01375 are separated by 92 nucleotides ABIE41_RS01375 and ABIE41_RS01380 are separated by 25 nucleotides ABIE41_RS01380 and ABIE41_RS01385 are separated by 92 nucleotides
ABIE41_RS01370: ABIE41_RS01370 - TRAP transporter large permease, at 270,536 to 271,930
_RS01370
ABIE41_RS01375: ABIE41_RS01375 - NAD(P)H-quinone oxidoreductase, at 272,023 to 273,024
_RS01375
ABIE41_RS01380: ABIE41_RS01380 - dienelactone hydrolase family protein, at 273,050 to 273,742
_RS01380
ABIE41_RS01385: ABIE41_RS01385 - alpha/beta hydrolase, at 273,835 to 274,926
_RS01385
Position (kb) 272
273
274 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 271.100 kb on + strand, within ABIE41_RS01370 at 271.100 kb on + strand, within ABIE41_RS01370 at 271.101 kb on - strand, within ABIE41_RS01370 at 271.101 kb on - strand, within ABIE41_RS01370 at 271.886 kb on + strand at 271.886 kb on + strand at 271.886 kb on + strand at 271.886 kb on + strand at 271.886 kb on + strand at 271.886 kb on + strand at 271.886 kb on + strand at 271.887 kb on - strand at 271.887 kb on - strand at 271.887 kb on - strand at 271.887 kb on - strand at 271.887 kb on - strand at 271.887 kb on - strand at 271.887 kb on - strand at 271.887 kb on - strand at 271.887 kb on - strand at 271.887 kb on - strand at 271.889 kb on - strand at 271.928 kb on + strand at 271.928 kb on + strand at 272.320 kb on + strand, within ABIE41_RS01375 at 272.320 kb on + strand, within ABIE41_RS01375 at 272.321 kb on - strand, within ABIE41_RS01375 at 272.321 kb on - strand, within ABIE41_RS01375 at 272.330 kb on - strand, within ABIE41_RS01375 at 272.330 kb on - strand, within ABIE41_RS01375 at 272.410 kb on + strand, within ABIE41_RS01375 at 272.410 kb on + strand, within ABIE41_RS01375 at 272.410 kb on + strand, within ABIE41_RS01375 at 272.411 kb on - strand, within ABIE41_RS01375 at 272.411 kb on - strand, within ABIE41_RS01375 at 272.411 kb on - strand, within ABIE41_RS01375 at 272.542 kb on + strand, within ABIE41_RS01375 at 272.542 kb on + strand, within ABIE41_RS01375 at 272.542 kb on + strand, within ABIE41_RS01375 at 272.542 kb on + strand, within ABIE41_RS01375 at 272.542 kb on + strand, within ABIE41_RS01375 at 272.542 kb on + strand, within ABIE41_RS01375 at 272.542 kb on + strand, within ABIE41_RS01375 at 272.698 kb on + strand, within ABIE41_RS01375 at 272.698 kb on + strand, within ABIE41_RS01375 at 272.698 kb on + strand, within ABIE41_RS01375 at 272.698 kb on + strand, within ABIE41_RS01375 at 272.699 kb on - strand, within ABIE41_RS01375 at 272.699 kb on - strand, within ABIE41_RS01375 at 272.699 kb on - strand, within ABIE41_RS01375 at 272.699 kb on - strand, within ABIE41_RS01375 at 272.700 kb on + strand, within ABIE41_RS01375 at 272.700 kb on + strand, within ABIE41_RS01375 at 272.701 kb on - strand, within ABIE41_RS01375 at 273.063 kb on + strand at 273.297 kb on + strand, within ABIE41_RS01380 at 273.297 kb on + strand, within ABIE41_RS01380 at 273.297 kb on + strand, within ABIE41_RS01380 at 273.298 kb on - strand, within ABIE41_RS01380 at 273.298 kb on - strand, within ABIE41_RS01380 at 273.456 kb on + strand, within ABIE41_RS01380 at 273.510 kb on + strand, within ABIE41_RS01380 at 273.510 kb on + strand, within ABIE41_RS01380 at 273.511 kb on - strand, within ABIE41_RS01380 at 273.531 kb on + strand, within ABIE41_RS01380 at 273.531 kb on + strand, within ABIE41_RS01380 at 273.532 kb on - strand, within ABIE41_RS01380 at 273.532 kb on - strand, within ABIE41_RS01380 at 273.567 kb on + strand, within ABIE41_RS01380 at 273.568 kb on - strand, within ABIE41_RS01380 at 273.938 kb on - strand at 273.947 kb on + strand, within ABIE41_RS01385 at 273.947 kb on + strand, within ABIE41_RS01385 at 273.947 kb on + strand, within ABIE41_RS01385 at 273.947 kb on + strand, within ABIE41_RS01385 at 273.947 kb on + strand, within ABIE41_RS01385 at 273.947 kb on + strand, within ABIE41_RS01385 at 273.948 kb on - strand, within ABIE41_RS01385
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM remove 271,100 + ABIE41_RS01370 0.40 -1.2 271,100 + ABIE41_RS01370 0.40 -0.5 271,101 - ABIE41_RS01370 0.41 +0.2 271,101 - ABIE41_RS01370 0.41 -1.9 271,886 + -0.4 271,886 + +1.0 271,886 + -0.6 271,886 + +0.6 271,886 + -3.3 271,886 + -0.5 271,886 + +0.3 271,887 - +1.9 271,887 - +1.9 271,887 - -0.9 271,887 - -1.2 271,887 - -0.2 271,887 - -0.2 271,887 - +0.1 271,887 - -2.0 271,887 - -0.4 271,887 - -2.3 271,889 - -1.0 271,928 + -0.4 271,928 + -0.3 272,320 + ABIE41_RS01375 0.30 +0.2 272,320 + ABIE41_RS01375 0.30 -1.2 272,321 - ABIE41_RS01375 0.30 +0.5 272,321 - ABIE41_RS01375 0.30 -0.0 272,330 - ABIE41_RS01375 0.31 +0.4 272,330 - ABIE41_RS01375 0.31 -0.3 272,410 + ABIE41_RS01375 0.39 +0.8 272,410 + ABIE41_RS01375 0.39 +0.5 272,410 + ABIE41_RS01375 0.39 -1.4 272,411 - ABIE41_RS01375 0.39 +0.4 272,411 - ABIE41_RS01375 0.39 -0.2 272,411 - ABIE41_RS01375 0.39 -0.0 272,542 + ABIE41_RS01375 0.52 -0.4 272,542 + ABIE41_RS01375 0.52 +0.6 272,542 + ABIE41_RS01375 0.52 +0.2 272,542 + ABIE41_RS01375 0.52 -1.0 272,542 + ABIE41_RS01375 0.52 -0.9 272,542 + ABIE41_RS01375 0.52 +0.2 272,542 + ABIE41_RS01375 0.52 -0.5 272,698 + ABIE41_RS01375 0.67 +0.4 272,698 + ABIE41_RS01375 0.67 -0.0 272,698 + ABIE41_RS01375 0.67 -0.7 272,698 + ABIE41_RS01375 0.67 +0.2 272,699 - ABIE41_RS01375 0.67 -0.5 272,699 - ABIE41_RS01375 0.67 -0.1 272,699 - ABIE41_RS01375 0.67 -0.6 272,699 - ABIE41_RS01375 0.67 -0.5 272,700 + ABIE41_RS01375 0.68 +0.1 272,700 + ABIE41_RS01375 0.68 +1.2 272,701 - ABIE41_RS01375 0.68 -1.8 273,063 + -2.8 273,297 + ABIE41_RS01380 0.36 +0.4 273,297 + ABIE41_RS01380 0.36 +0.4 273,297 + ABIE41_RS01380 0.36 +0.6 273,298 - ABIE41_RS01380 0.36 -0.3 273,298 - ABIE41_RS01380 0.36 -0.2 273,456 + ABIE41_RS01380 0.59 +1.2 273,510 + ABIE41_RS01380 0.66 +0.7 273,510 + ABIE41_RS01380 0.66 -0.1 273,511 - ABIE41_RS01380 0.67 -0.1 273,531 + ABIE41_RS01380 0.69 +1.1 273,531 + ABIE41_RS01380 0.69 +2.3 273,532 - ABIE41_RS01380 0.70 +1.4 273,532 - ABIE41_RS01380 0.70 +0.1 273,567 + ABIE41_RS01380 0.75 +1.0 273,568 - ABIE41_RS01380 0.75 +0.6 273,938 - -0.6 273,947 + ABIE41_RS01385 0.10 +0.6 273,947 + ABIE41_RS01385 0.10 +0.3 273,947 + ABIE41_RS01385 0.10 -0.4 273,947 + ABIE41_RS01385 0.10 +0.6 273,947 + ABIE41_RS01385 0.10 +0.3 273,947 + ABIE41_RS01385 0.10 -0.4 273,948 - ABIE41_RS01385 0.10 +0.5
Or see this region's nucleotide sequence