Experiment: R2A with 2-pentyl-furan 21.3684 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS00585 and ABIE41_RS00590 are separated by 94 nucleotides ABIE41_RS00590 and ABIE41_RS00595 overlap by 8 nucleotides ABIE41_RS00595 and ABIE41_RS00600 are separated by 321 nucleotides ABIE41_RS00600 and ABIE41_RS00605 overlap by 25 nucleotides
ABIE41_RS00585: ABIE41_RS00585 - P63C domain-containing protein, at 108,652 to 109,668
_RS00585
ABIE41_RS00590: ABIE41_RS00590 - RNA-binding protein, at 109,763 to 109,993
_RS00590
ABIE41_RS00595: ABIE41_RS00595 - hypothetical protein, at 109,986 to 110,186
_RS00595
ABIE41_RS00600: ABIE41_RS00600 - hypothetical protein, at 110,508 to 111,239
_RS00600
ABIE41_RS00605: ABIE41_RS00605 - hypothetical protein, at 111,215 to 112,474
_RS00605
Position (kb) 110
111
112 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 109.765 kb on - strand at 109.765 kb on - strand at 109.765 kb on - strand at 109.988 kb on - strand at 109.988 kb on - strand at 110.047 kb on + strand, within ABIE41_RS00595 at 110.047 kb on + strand, within ABIE41_RS00595 at 110.047 kb on + strand, within ABIE41_RS00595 at 110.047 kb on + strand, within ABIE41_RS00595 at 110.048 kb on - strand, within ABIE41_RS00595 at 110.048 kb on - strand, within ABIE41_RS00595 at 110.048 kb on - strand, within ABIE41_RS00595 at 110.166 kb on + strand, within ABIE41_RS00595 at 110.166 kb on + strand, within ABIE41_RS00595 at 110.167 kb on - strand at 110.167 kb on - strand at 110.192 kb on + strand at 110.192 kb on + strand at 110.192 kb on + strand at 110.192 kb on + strand at 110.193 kb on - strand at 110.193 kb on - strand at 110.193 kb on - strand at 110.193 kb on - strand at 110.218 kb on + strand at 110.218 kb on + strand at 110.218 kb on + strand at 110.218 kb on + strand at 110.218 kb on + strand at 110.218 kb on + strand at 110.218 kb on + strand at 110.219 kb on - strand at 110.219 kb on - strand at 110.219 kb on - strand at 110.219 kb on - strand at 110.219 kb on - strand at 110.219 kb on - strand at 110.219 kb on - strand at 110.427 kb on + strand at 110.427 kb on + strand at 110.490 kb on + strand at 110.491 kb on - strand at 110.509 kb on + strand at 110.534 kb on - strand at 110.581 kb on + strand at 110.722 kb on + strand, within ABIE41_RS00600 at 110.722 kb on + strand, within ABIE41_RS00600 at 110.723 kb on - strand, within ABIE41_RS00600 at 110.815 kb on + strand, within ABIE41_RS00600 at 110.815 kb on + strand, within ABIE41_RS00600 at 110.815 kb on + strand, within ABIE41_RS00600 at 110.815 kb on + strand, within ABIE41_RS00600 at 110.815 kb on + strand, within ABIE41_RS00600 at 110.816 kb on - strand, within ABIE41_RS00600 at 110.816 kb on - strand, within ABIE41_RS00600 at 110.816 kb on - strand, within ABIE41_RS00600 at 110.816 kb on - strand, within ABIE41_RS00600 at 110.818 kb on + strand, within ABIE41_RS00600 at 110.818 kb on + strand, within ABIE41_RS00600 at 110.819 kb on - strand, within ABIE41_RS00600 at 110.819 kb on - strand, within ABIE41_RS00600 at 110.929 kb on - strand, within ABIE41_RS00600 at 111.036 kb on + strand, within ABIE41_RS00600 at 111.036 kb on + strand, within ABIE41_RS00600 at 111.036 kb on + strand, within ABIE41_RS00600 at 111.036 kb on + strand, within ABIE41_RS00600 at 111.036 kb on + strand, within ABIE41_RS00600 at 111.037 kb on - strand, within ABIE41_RS00600 at 111.239 kb on + strand at 111.239 kb on + strand at 111.240 kb on - strand at 111.240 kb on - strand at 111.241 kb on + strand at 111.241 kb on + strand at 111.241 kb on + strand at 111.241 kb on + strand at 111.241 kb on + strand at 111.241 kb on + strand at 111.241 kb on + strand at 111.241 kb on + strand at 111.241 kb on + strand at 111.241 kb on + strand at 111.241 kb on + strand at 111.241 kb on + strand at 111.241 kb on + strand at 111.241 kb on + strand at 111.241 kb on + strand at 111.241 kb on + strand at 111.241 kb on + strand at 111.241 kb on + strand at 111.241 kb on + strand at 111.241 kb on + strand at 111.241 kb on + strand at 111.241 kb on + strand at 111.241 kb on + strand at 111.242 kb on - strand at 111.242 kb on - strand at 111.242 kb on - strand at 111.242 kb on - strand at 111.242 kb on - strand at 111.242 kb on - strand at 111.242 kb on - strand at 111.242 kb on - strand at 111.242 kb on - strand at 111.242 kb on - strand at 111.561 kb on + strand, within ABIE41_RS00605 at 111.561 kb on + strand, within ABIE41_RS00605 at 111.561 kb on + strand, within ABIE41_RS00605 at 111.561 kb on + strand, within ABIE41_RS00605 at 111.562 kb on - strand, within ABIE41_RS00605 at 111.562 kb on - strand, within ABIE41_RS00605 at 111.598 kb on - strand, within ABIE41_RS00605 at 111.598 kb on - strand, within ABIE41_RS00605 at 111.598 kb on - strand, within ABIE41_RS00605 at 111.603 kb on + strand, within ABIE41_RS00605 at 111.603 kb on + strand, within ABIE41_RS00605 at 111.604 kb on - strand, within ABIE41_RS00605 at 111.604 kb on - strand, within ABIE41_RS00605 at 111.604 kb on - strand, within ABIE41_RS00605 at 111.612 kb on + strand, within ABIE41_RS00605 at 111.612 kb on + strand, within ABIE41_RS00605 at 111.612 kb on + strand, within ABIE41_RS00605 at 111.612 kb on + strand, within ABIE41_RS00605 at 111.612 kb on + strand, within ABIE41_RS00605 at 111.613 kb on - strand, within ABIE41_RS00605 at 111.613 kb on - strand, within ABIE41_RS00605 at 111.678 kb on + strand, within ABIE41_RS00605 at 111.678 kb on + strand, within ABIE41_RS00605 at 111.678 kb on + strand, within ABIE41_RS00605 at 111.678 kb on + strand, within ABIE41_RS00605 at 111.679 kb on - strand, within ABIE41_RS00605 at 111.679 kb on - strand, within ABIE41_RS00605 at 111.679 kb on - strand, within ABIE41_RS00605 at 111.679 kb on - strand, within ABIE41_RS00605 at 111.679 kb on - strand, within ABIE41_RS00605 at 111.679 kb on - strand, within ABIE41_RS00605 at 111.679 kb on - strand, within ABIE41_RS00605 at 111.682 kb on - strand, within ABIE41_RS00605 at 111.690 kb on + strand, within ABIE41_RS00605 at 111.690 kb on + strand, within ABIE41_RS00605 at 111.690 kb on + strand, within ABIE41_RS00605 at 111.690 kb on + strand, within ABIE41_RS00605 at 111.690 kb on + strand, within ABIE41_RS00605 at 111.690 kb on + strand, within ABIE41_RS00605 at 111.690 kb on + strand, within ABIE41_RS00605 at 111.691 kb on - strand, within ABIE41_RS00605 at 111.691 kb on - strand, within ABIE41_RS00605 at 111.691 kb on - strand, within ABIE41_RS00605 at 111.691 kb on - strand, within ABIE41_RS00605 at 111.691 kb on - strand, within ABIE41_RS00605 at 111.692 kb on - strand, within ABIE41_RS00605 at 111.726 kb on + strand, within ABIE41_RS00605 at 111.726 kb on + strand, within ABIE41_RS00605 at 111.758 kb on + strand, within ABIE41_RS00605 at 111.759 kb on - strand, within ABIE41_RS00605 at 111.858 kb on + strand, within ABIE41_RS00605 at 111.858 kb on + strand, within ABIE41_RS00605 at 111.859 kb on - strand, within ABIE41_RS00605 at 111.859 kb on - strand, within ABIE41_RS00605 at 111.859 kb on - strand, within ABIE41_RS00605 at 111.979 kb on - strand, within ABIE41_RS00605 at 111.979 kb on - strand, within ABIE41_RS00605 at 111.979 kb on - strand, within ABIE41_RS00605 at 111.979 kb on - strand, within ABIE41_RS00605 at 112.099 kb on - strand, within ABIE41_RS00605 at 112.099 kb on - strand, within ABIE41_RS00605 at 112.204 kb on + strand, within ABIE41_RS00605 at 112.204 kb on + strand, within ABIE41_RS00605 at 112.207 kb on - strand, within ABIE41_RS00605 at 112.207 kb on - strand, within ABIE41_RS00605 at 112.216 kb on + strand, within ABIE41_RS00605 at 112.217 kb on - strand, within ABIE41_RS00605 at 112.219 kb on - strand, within ABIE41_RS00605
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM remove 109,765 - +0.2 109,765 - -1.0 109,765 - -0.1 109,988 - -0.3 109,988 - +1.6 110,047 + ABIE41_RS00595 0.30 -0.0 110,047 + ABIE41_RS00595 0.30 +0.0 110,047 + ABIE41_RS00595 0.30 -1.1 110,047 + ABIE41_RS00595 0.30 +0.5 110,048 - ABIE41_RS00595 0.31 -0.1 110,048 - ABIE41_RS00595 0.31 -0.3 110,048 - ABIE41_RS00595 0.31 -0.5 110,166 + ABIE41_RS00595 0.90 -0.3 110,166 + ABIE41_RS00595 0.90 -0.1 110,167 - -2.7 110,167 - +0.5 110,192 + -1.4 110,192 + +1.0 110,192 + -0.3 110,192 + -2.3 110,193 - +0.3 110,193 - -0.4 110,193 - +0.3 110,193 - +0.5 110,218 + +0.4 110,218 + -1.0 110,218 + +0.3 110,218 + +0.2 110,218 + -0.0 110,218 + +1.0 110,218 + -0.6 110,219 - +2.3 110,219 - -0.7 110,219 - -0.2 110,219 - -0.1 110,219 - +0.0 110,219 - +0.1 110,219 - +0.0 110,427 + +2.0 110,427 + -0.8 110,490 + -0.3 110,491 - -0.1 110,509 + -0.6 110,534 - -1.0 110,581 + -0.2 110,722 + ABIE41_RS00600 0.29 +0.3 110,722 + ABIE41_RS00600 0.29 -0.1 110,723 - ABIE41_RS00600 0.29 -0.2 110,815 + ABIE41_RS00600 0.42 -0.8 110,815 + ABIE41_RS00600 0.42 -0.0 110,815 + ABIE41_RS00600 0.42 -0.7 110,815 + ABIE41_RS00600 0.42 +0.3 110,815 + ABIE41_RS00600 0.42 +0.3 110,816 - ABIE41_RS00600 0.42 +0.2 110,816 - ABIE41_RS00600 0.42 -0.6 110,816 - ABIE41_RS00600 0.42 -0.1 110,816 - ABIE41_RS00600 0.42 +1.2 110,818 + ABIE41_RS00600 0.42 +0.1 110,818 + ABIE41_RS00600 0.42 -0.3 110,819 - ABIE41_RS00600 0.42 +0.9 110,819 - ABIE41_RS00600 0.42 -0.9 110,929 - ABIE41_RS00600 0.58 -0.2 111,036 + ABIE41_RS00600 0.72 +0.4 111,036 + ABIE41_RS00600 0.72 -0.2 111,036 + ABIE41_RS00600 0.72 +1.4 111,036 + ABIE41_RS00600 0.72 +1.6 111,036 + ABIE41_RS00600 0.72 -0.8 111,037 - ABIE41_RS00600 0.72 +0.7 111,239 + -0.1 111,239 + +0.6 111,240 - +0.2 111,240 - -1.7 111,241 + +0.3 111,241 + +0.1 111,241 + -0.5 111,241 + -0.7 111,241 + -0.6 111,241 + +2.0 111,241 + -0.0 111,241 + -1.2 111,241 + +0.2 111,241 + -0.9 111,241 + +0.9 111,241 + -0.6 111,241 + +1.2 111,241 + +1.4 111,241 + +0.6 111,241 + +1.5 111,241 + -0.4 111,241 + -2.3 111,241 + +0.7 111,241 + -1.6 111,241 + +1.6 111,241 + -0.3 111,241 + +0.4 111,242 - -0.7 111,242 - +0.4 111,242 - +1.5 111,242 - +0.4 111,242 - +1.5 111,242 - -0.0 111,242 - -2.1 111,242 - -0.9 111,242 - +1.0 111,242 - -0.1 111,561 + ABIE41_RS00605 0.27 +0.1 111,561 + ABIE41_RS00605 0.27 -1.7 111,561 + ABIE41_RS00605 0.27 +1.1 111,561 + ABIE41_RS00605 0.27 +1.0 111,562 - ABIE41_RS00605 0.28 -0.1 111,562 - ABIE41_RS00605 0.28 +0.7 111,598 - ABIE41_RS00605 0.30 -2.8 111,598 - ABIE41_RS00605 0.30 -0.1 111,598 - ABIE41_RS00605 0.30 +0.2 111,603 + ABIE41_RS00605 0.31 +0.6 111,603 + ABIE41_RS00605 0.31 -2.2 111,604 - ABIE41_RS00605 0.31 -0.5 111,604 - ABIE41_RS00605 0.31 +0.3 111,604 - ABIE41_RS00605 0.31 -0.2 111,612 + ABIE41_RS00605 0.32 -0.1 111,612 + ABIE41_RS00605 0.32 +0.1 111,612 + ABIE41_RS00605 0.32 -0.5 111,612 + ABIE41_RS00605 0.32 +2.2 111,612 + ABIE41_RS00605 0.32 -0.8 111,613 - ABIE41_RS00605 0.32 -1.2 111,613 - ABIE41_RS00605 0.32 -0.5 111,678 + ABIE41_RS00605 0.37 -0.0 111,678 + ABIE41_RS00605 0.37 -0.4 111,678 + ABIE41_RS00605 0.37 +0.2 111,678 + ABIE41_RS00605 0.37 +0.3 111,679 - ABIE41_RS00605 0.37 -0.6 111,679 - ABIE41_RS00605 0.37 -0.4 111,679 - ABIE41_RS00605 0.37 -0.8 111,679 - ABIE41_RS00605 0.37 +1.5 111,679 - ABIE41_RS00605 0.37 -0.4 111,679 - ABIE41_RS00605 0.37 +0.4 111,679 - ABIE41_RS00605 0.37 +1.7 111,682 - ABIE41_RS00605 0.37 -0.6 111,690 + ABIE41_RS00605 0.38 +3.4 111,690 + ABIE41_RS00605 0.38 +1.1 111,690 + ABIE41_RS00605 0.38 -0.4 111,690 + ABIE41_RS00605 0.38 -0.5 111,690 + ABIE41_RS00605 0.38 +2.0 111,690 + ABIE41_RS00605 0.38 -0.6 111,690 + ABIE41_RS00605 0.38 +0.3 111,691 - ABIE41_RS00605 0.38 +0.8 111,691 - ABIE41_RS00605 0.38 +0.5 111,691 - ABIE41_RS00605 0.38 -0.1 111,691 - ABIE41_RS00605 0.38 +0.8 111,691 - ABIE41_RS00605 0.38 +1.8 111,692 - ABIE41_RS00605 0.38 -0.3 111,726 + ABIE41_RS00605 0.41 +1.5 111,726 + ABIE41_RS00605 0.41 -0.0 111,758 + ABIE41_RS00605 0.43 +1.3 111,759 - ABIE41_RS00605 0.43 +0.3 111,858 + ABIE41_RS00605 0.51 -1.3 111,858 + ABIE41_RS00605 0.51 -0.3 111,859 - ABIE41_RS00605 0.51 +0.1 111,859 - ABIE41_RS00605 0.51 -0.2 111,859 - ABIE41_RS00605 0.51 +0.3 111,979 - ABIE41_RS00605 0.61 -0.2 111,979 - ABIE41_RS00605 0.61 -1.2 111,979 - ABIE41_RS00605 0.61 +0.6 111,979 - ABIE41_RS00605 0.61 +0.3 112,099 - ABIE41_RS00605 0.70 +0.5 112,099 - ABIE41_RS00605 0.70 +0.1 112,204 + ABIE41_RS00605 0.78 -0.2 112,204 + ABIE41_RS00605 0.78 +1.5 112,207 - ABIE41_RS00605 0.79 +0.1 112,207 - ABIE41_RS00605 0.79 -2.3 112,216 + ABIE41_RS00605 0.79 -0.1 112,217 - ABIE41_RS00605 0.80 -0.0 112,219 - ABIE41_RS00605 0.80 -0.3
Or see this region's nucleotide sequence