Experiment: R2A with 2-pentyl-furan 21.3684 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS00315 and ABIE41_RS00320 are separated by 43 nucleotides ABIE41_RS00320 and ABIE41_RS00325 are separated by 213 nucleotides ABIE41_RS00325 and ABIE41_RS00330 are separated by 34 nucleotides
ABIE41_RS00315: ABIE41_RS00315 - sulfite oxidase-like oxidoreductase, at 54,931 to 55,596
_RS00315
ABIE41_RS00320: ABIE41_RS00320 - methyl-accepting chemotaxis protein, at 55,640 to 57,460
_RS00320
ABIE41_RS00325: ABIE41_RS00325 - LemA family protein, at 57,674 to 58,231
_RS00325
ABIE41_RS00330: ABIE41_RS00330 - M48 family metallopeptidase, at 58,266 to 59,363
_RS00330
Position (kb) 55
56
57
58 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 54.928 kb on + strand at 55.244 kb on - strand, within ABIE41_RS00315 at 55.333 kb on + strand, within ABIE41_RS00315 at 55.333 kb on + strand, within ABIE41_RS00315 at 55.333 kb on + strand, within ABIE41_RS00315 at 55.334 kb on - strand, within ABIE41_RS00315 at 55.334 kb on - strand, within ABIE41_RS00315 at 55.334 kb on - strand, within ABIE41_RS00315 at 55.334 kb on - strand, within ABIE41_RS00315 at 55.334 kb on - strand, within ABIE41_RS00315 at 55.334 kb on - strand, within ABIE41_RS00315 at 55.334 kb on - strand, within ABIE41_RS00315 at 55.334 kb on - strand, within ABIE41_RS00315 at 55.334 kb on - strand, within ABIE41_RS00315 at 55.417 kb on - strand, within ABIE41_RS00315 at 55.465 kb on + strand, within ABIE41_RS00315 at 55.466 kb on - strand, within ABIE41_RS00315 at 55.582 kb on + strand at 55.582 kb on + strand at 55.582 kb on + strand at 55.582 kb on + strand at 55.582 kb on + strand at 55.583 kb on - strand at 55.583 kb on - strand at 55.583 kb on - strand at 55.898 kb on - strand, within ABIE41_RS00320 at 55.898 kb on - strand, within ABIE41_RS00320 at 55.898 kb on - strand, within ABIE41_RS00320 at 55.983 kb on + strand, within ABIE41_RS00320 at 56.483 kb on + strand, within ABIE41_RS00320 at 56.484 kb on - strand, within ABIE41_RS00320 at 56.784 kb on + strand, within ABIE41_RS00320 at 56.784 kb on + strand, within ABIE41_RS00320 at 56.784 kb on + strand, within ABIE41_RS00320 at 56.784 kb on + strand, within ABIE41_RS00320 at 56.784 kb on + strand, within ABIE41_RS00320 at 56.785 kb on - strand, within ABIE41_RS00320 at 56.785 kb on - strand, within ABIE41_RS00320 at 56.785 kb on - strand, within ABIE41_RS00320 at 56.832 kb on + strand, within ABIE41_RS00320 at 56.883 kb on + strand, within ABIE41_RS00320 at 56.884 kb on - strand, within ABIE41_RS00320 at 56.977 kb on + strand, within ABIE41_RS00320 at 56.978 kb on - strand, within ABIE41_RS00320 at 56.978 kb on - strand, within ABIE41_RS00320 at 56.978 kb on - strand, within ABIE41_RS00320 at 56.995 kb on + strand, within ABIE41_RS00320 at 56.995 kb on + strand, within ABIE41_RS00320 at 57.150 kb on + strand, within ABIE41_RS00320 at 57.150 kb on + strand, within ABIE41_RS00320 at 57.150 kb on + strand, within ABIE41_RS00320 at 57.150 kb on + strand, within ABIE41_RS00320 at 57.150 kb on + strand, within ABIE41_RS00320 at 57.151 kb on - strand, within ABIE41_RS00320 at 57.151 kb on - strand, within ABIE41_RS00320 at 57.151 kb on - strand, within ABIE41_RS00320 at 57.151 kb on - strand, within ABIE41_RS00320 at 57.249 kb on + strand, within ABIE41_RS00320 at 57.249 kb on + strand, within ABIE41_RS00320 at 57.250 kb on - strand, within ABIE41_RS00320 at 57.250 kb on - strand, within ABIE41_RS00320 at 57.250 kb on - strand, within ABIE41_RS00320 at 57.250 kb on - strand, within ABIE41_RS00320 at 57.321 kb on + strand at 57.322 kb on - strand at 57.468 kb on - strand at 57.478 kb on + strand at 57.478 kb on + strand at 57.479 kb on - strand at 57.537 kb on + strand at 57.538 kb on - strand at 57.539 kb on + strand at 57.540 kb on - strand at 57.565 kb on + strand at 57.716 kb on + strand at 57.717 kb on - strand at 57.717 kb on - strand at 57.717 kb on - strand at 57.717 kb on - strand at 57.731 kb on + strand, within ABIE41_RS00325 at 57.731 kb on + strand, within ABIE41_RS00325 at 57.731 kb on + strand, within ABIE41_RS00325 at 57.731 kb on + strand, within ABIE41_RS00325 at 57.731 kb on + strand, within ABIE41_RS00325 at 57.731 kb on + strand, within ABIE41_RS00325 at 57.731 kb on + strand, within ABIE41_RS00325 at 57.731 kb on + strand, within ABIE41_RS00325 at 57.731 kb on + strand, within ABIE41_RS00325 at 57.732 kb on - strand, within ABIE41_RS00325 at 57.732 kb on - strand, within ABIE41_RS00325 at 57.732 kb on - strand, within ABIE41_RS00325 at 57.732 kb on - strand, within ABIE41_RS00325 at 57.733 kb on + strand, within ABIE41_RS00325 at 57.734 kb on - strand, within ABIE41_RS00325 at 57.846 kb on - strand, within ABIE41_RS00325 at 57.879 kb on + strand, within ABIE41_RS00325 at 58.290 kb on + strand at 58.290 kb on + strand at 58.291 kb on - strand at 58.291 kb on - strand at 58.356 kb on + strand at 58.356 kb on + strand at 58.356 kb on + strand at 58.356 kb on + strand at 58.356 kb on + strand at 58.356 kb on + strand at 58.356 kb on + strand at 58.356 kb on + strand at 58.357 kb on - strand at 58.357 kb on - strand at 58.357 kb on - strand at 58.357 kb on - strand at 58.357 kb on - strand at 58.357 kb on - strand at 58.357 kb on - strand at 58.357 kb on - strand at 58.425 kb on + strand, within ABIE41_RS00330 at 58.426 kb on - strand, within ABIE41_RS00330
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 2-pentyl-furan 21.3684 mM remove 54,928 + +0.3 55,244 - ABIE41_RS00315 0.47 -0.1 55,333 + ABIE41_RS00315 0.60 +1.2 55,333 + ABIE41_RS00315 0.60 -0.7 55,333 + ABIE41_RS00315 0.60 +0.2 55,334 - ABIE41_RS00315 0.61 -0.4 55,334 - ABIE41_RS00315 0.61 +0.6 55,334 - ABIE41_RS00315 0.61 +1.0 55,334 - ABIE41_RS00315 0.61 +0.5 55,334 - ABIE41_RS00315 0.61 -3.2 55,334 - ABIE41_RS00315 0.61 -0.5 55,334 - ABIE41_RS00315 0.61 -0.1 55,334 - ABIE41_RS00315 0.61 +0.6 55,334 - ABIE41_RS00315 0.61 -0.7 55,417 - ABIE41_RS00315 0.73 +3.0 55,465 + ABIE41_RS00315 0.80 +0.5 55,466 - ABIE41_RS00315 0.80 +0.5 55,582 + -0.2 55,582 + +0.4 55,582 + +4.3 55,582 + -0.1 55,582 + -0.1 55,583 - -0.3 55,583 - +1.2 55,583 - +0.9 55,898 - ABIE41_RS00320 0.14 -0.3 55,898 - ABIE41_RS00320 0.14 +1.5 55,898 - ABIE41_RS00320 0.14 +0.7 55,983 + ABIE41_RS00320 0.19 -2.0 56,483 + ABIE41_RS00320 0.46 +0.3 56,484 - ABIE41_RS00320 0.46 +1.0 56,784 + ABIE41_RS00320 0.63 -3.0 56,784 + ABIE41_RS00320 0.63 -0.3 56,784 + ABIE41_RS00320 0.63 -2.1 56,784 + ABIE41_RS00320 0.63 +0.6 56,784 + ABIE41_RS00320 0.63 -0.4 56,785 - ABIE41_RS00320 0.63 +0.3 56,785 - ABIE41_RS00320 0.63 -1.6 56,785 - ABIE41_RS00320 0.63 +1.3 56,832 + ABIE41_RS00320 0.65 +0.1 56,883 + ABIE41_RS00320 0.68 +0.9 56,884 - ABIE41_RS00320 0.68 +0.4 56,977 + ABIE41_RS00320 0.73 +0.2 56,978 - ABIE41_RS00320 0.73 +2.0 56,978 - ABIE41_RS00320 0.73 +0.1 56,978 - ABIE41_RS00320 0.73 -0.0 56,995 + ABIE41_RS00320 0.74 -0.7 56,995 + ABIE41_RS00320 0.74 -0.2 57,150 + ABIE41_RS00320 0.83 +0.2 57,150 + ABIE41_RS00320 0.83 +0.4 57,150 + ABIE41_RS00320 0.83 -0.2 57,150 + ABIE41_RS00320 0.83 -0.5 57,150 + ABIE41_RS00320 0.83 -0.6 57,151 - ABIE41_RS00320 0.83 -0.2 57,151 - ABIE41_RS00320 0.83 -0.1 57,151 - ABIE41_RS00320 0.83 -0.2 57,151 - ABIE41_RS00320 0.83 -0.1 57,249 + ABIE41_RS00320 0.88 +1.6 57,249 + ABIE41_RS00320 0.88 +0.2 57,250 - ABIE41_RS00320 0.88 +0.5 57,250 - ABIE41_RS00320 0.88 +2.1 57,250 - ABIE41_RS00320 0.88 -0.7 57,250 - ABIE41_RS00320 0.88 -0.2 57,321 + -0.1 57,322 - -1.1 57,468 - -0.5 57,478 + +0.3 57,478 + +0.5 57,479 - -0.6 57,537 + +0.5 57,538 - +0.2 57,539 + +0.5 57,540 - +0.2 57,565 + +2.5 57,716 + -0.2 57,717 - +0.2 57,717 - +0.0 57,717 - -1.3 57,717 - +0.4 57,731 + ABIE41_RS00325 0.10 -0.1 57,731 + ABIE41_RS00325 0.10 -0.2 57,731 + ABIE41_RS00325 0.10 +0.8 57,731 + ABIE41_RS00325 0.10 -1.7 57,731 + ABIE41_RS00325 0.10 -0.0 57,731 + ABIE41_RS00325 0.10 -0.3 57,731 + ABIE41_RS00325 0.10 +0.1 57,731 + ABIE41_RS00325 0.10 -0.4 57,731 + ABIE41_RS00325 0.10 +0.0 57,732 - ABIE41_RS00325 0.10 -1.0 57,732 - ABIE41_RS00325 0.10 +0.3 57,732 - ABIE41_RS00325 0.10 -0.2 57,732 - ABIE41_RS00325 0.10 -0.6 57,733 + ABIE41_RS00325 0.11 +1.8 57,734 - ABIE41_RS00325 0.11 -1.5 57,846 - ABIE41_RS00325 0.31 +0.1 57,879 + ABIE41_RS00325 0.37 +0.1 58,290 + +0.2 58,290 + -0.3 58,291 - -1.2 58,291 - +0.8 58,356 + +1.2 58,356 + +0.0 58,356 + +0.8 58,356 + +0.4 58,356 + -1.8 58,356 + -0.1 58,356 + +1.4 58,356 + -0.3 58,357 - -0.5 58,357 - -0.3 58,357 - +0.1 58,357 - +0.9 58,357 - +1.2 58,357 - -0.5 58,357 - -0.1 58,357 - -0.2 58,425 + ABIE41_RS00330 0.14 -0.6 58,426 - ABIE41_RS00330 0.15 +0.5
Or see this region's nucleotide sequence