Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS27670 and ABID97_RS27675 are separated by 0 nucleotides ABID97_RS27675 and ABID97_RS27680 are separated by 31 nucleotides ABID97_RS27680 and ABID97_RS27685 are separated by 90 nucleotides
ABID97_RS27670: ABID97_RS27670 - glycerate kinase, at 453,265 to 454,569
_RS27670
ABID97_RS27675: ABID97_RS27675 - pyruvate kinase, at 454,570 to 455,988
_RS27675
ABID97_RS27680: ABID97_RS27680 - hypothetical protein, at 456,020 to 456,196
_RS27680
ABID97_RS27685: ABID97_RS27685 - L,D-transpeptidase family protein, at 456,287 to 457,303
_RS27685
Position (kb) 454
455
456 Strain fitness (log2 ratio) -1
0
1 at 454.084 kb on + strand, within ABID97_RS27670 at 454.093 kb on + strand, within ABID97_RS27670 at 454.093 kb on + strand, within ABID97_RS27670 at 454.094 kb on - strand, within ABID97_RS27670 at 454.094 kb on - strand, within ABID97_RS27670 at 454.268 kb on - strand, within ABID97_RS27670 at 455.471 kb on - strand, within ABID97_RS27675 at 455.584 kb on + strand, within ABID97_RS27675 at 455.699 kb on - strand, within ABID97_RS27675 at 455.699 kb on - strand, within ABID97_RS27675 at 456.225 kb on + strand at 456.563 kb on + strand, within ABID97_RS27685 at 456.564 kb on - strand, within ABID97_RS27685 at 456.656 kb on + strand, within ABID97_RS27685 at 456.657 kb on - strand, within ABID97_RS27685 at 456.657 kb on - strand, within ABID97_RS27685
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 454,084 + ABID97_RS27670 0.63 +0.4 454,093 + ABID97_RS27670 0.63 -0.3 454,093 + ABID97_RS27670 0.63 -0.5 454,094 - ABID97_RS27670 0.64 -0.8 454,094 - ABID97_RS27670 0.64 +0.7 454,268 - ABID97_RS27670 0.77 +0.4 455,471 - ABID97_RS27675 0.63 -0.6 455,584 + ABID97_RS27675 0.71 -1.1 455,699 - ABID97_RS27675 0.80 -1.6 455,699 - ABID97_RS27675 0.80 -0.8 456,225 + -0.2 456,563 + ABID97_RS27685 0.27 -0.3 456,564 - ABID97_RS27685 0.27 +1.1 456,656 + ABID97_RS27685 0.36 -0.5 456,657 - ABID97_RS27685 0.36 -0.8 456,657 - ABID97_RS27685 0.36 -0.3
Or see this region's nucleotide sequence