Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27515

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27510 and ABID97_RS27515 are separated by 80 nucleotidesABID97_RS27515 and ABID97_RS27520 are separated by 28 nucleotides ABID97_RS27510: ABID97_RS27510 - LysR substrate-binding domain-containing protein, at 418,847 to 419,743 _RS27510 ABID97_RS27515: ABID97_RS27515 - aconitase family protein, at 419,824 to 421,818 _RS27515 ABID97_RS27520: ABID97_RS27520 - tripartite tricarboxylate transporter substrate binding protein, at 421,847 to 422,830 _RS27520 Position (kb) 419 420 421 422Strain fitness (log2 ratio) -1 0 1at 418.877 kb on + strandat 419.113 kb on - strand, within ABID97_RS27510at 419.216 kb on + strand, within ABID97_RS27510at 419.679 kb on - strandat 419.741 kb on + strandat 420.044 kb on - strand, within ABID97_RS27515at 420.658 kb on + strand, within ABID97_RS27515at 420.659 kb on - strand, within ABID97_RS27515at 420.659 kb on - strand, within ABID97_RS27515at 421.297 kb on + strand, within ABID97_RS27515at 421.831 kb on - strandat 422.168 kb on + strand, within ABID97_RS27520at 422.322 kb on - strand, within ABID97_RS27520at 422.660 kb on + strand, within ABID97_RS27520at 422.661 kb on - strand, within ABID97_RS27520

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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418,877 + +0.5
419,113 - ABID97_RS27510 0.30 +1.1
419,216 + ABID97_RS27510 0.41 -0.8
419,679 - +0.3
419,741 + +0.2
420,044 - ABID97_RS27515 0.11 -0.4
420,658 + ABID97_RS27515 0.42 -0.8
420,659 - ABID97_RS27515 0.42 -0.9
420,659 - ABID97_RS27515 0.42 -1.1
421,297 + ABID97_RS27515 0.74 +0.1
421,831 - -0.3
422,168 + ABID97_RS27520 0.33 +0.9
422,322 - ABID97_RS27520 0.48 -0.1
422,660 + ABID97_RS27520 0.83 +1.3
422,661 - ABID97_RS27520 0.83 -0.3

Or see this region's nucleotide sequence