Strain Fitness in Variovorax sp. OAS795 around ABID97_RS26930

Experiment: no phage control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS26925 and ABID97_RS26930 are separated by 42 nucleotidesABID97_RS26930 and ABID97_RS26935 are separated by 114 nucleotides ABID97_RS26925: ABID97_RS26925 - MFS transporter, at 307,555 to 308,766 _RS26925 ABID97_RS26930: ABID97_RS26930 - SLAC1 anion channel family protein, at 308,809 to 309,807 _RS26930 ABID97_RS26935: ABID97_RS26935 - GlxA family transcriptional regulator, at 309,922 to 310,875 _RS26935 Position (kb) 308 309 310Strain fitness (log2 ratio) -1 0 1at 308.209 kb on + strand, within ABID97_RS26925at 308.209 kb on + strand, within ABID97_RS26925at 308.210 kb on - strand, within ABID97_RS26925at 308.210 kb on - strand, within ABID97_RS26925at 308.210 kb on - strand, within ABID97_RS26925at 308.211 kb on + strand, within ABID97_RS26925at 308.212 kb on - strand, within ABID97_RS26925at 308.212 kb on - strand, within ABID97_RS26925at 308.555 kb on - strand, within ABID97_RS26925at 308.939 kb on + strand, within ABID97_RS26930at 308.940 kb on - strand, within ABID97_RS26930at 308.940 kb on - strand, within ABID97_RS26930at 309.604 kb on + strand, within ABID97_RS26930at 309.847 kb on + strandat 309.848 kb on - strandat 309.903 kb on + strandat 310.028 kb on - strand, within ABID97_RS26935at 310.366 kb on + strand, within ABID97_RS26935

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
remove
308,209 + ABID97_RS26925 0.54 -1.5
308,209 + ABID97_RS26925 0.54 -0.4
308,210 - ABID97_RS26925 0.54 -0.0
308,210 - ABID97_RS26925 0.54 -0.1
308,210 - ABID97_RS26925 0.54 +0.2
308,211 + ABID97_RS26925 0.54 +0.2
308,212 - ABID97_RS26925 0.54 -0.2
308,212 - ABID97_RS26925 0.54 -0.8
308,555 - ABID97_RS26925 0.83 -0.9
308,939 + ABID97_RS26930 0.13 -1.4
308,940 - ABID97_RS26930 0.13 +0.7
308,940 - ABID97_RS26930 0.13 -0.9
309,604 + ABID97_RS26930 0.80 -0.6
309,847 + -0.6
309,848 - +1.3
309,903 + -0.5
310,028 - ABID97_RS26935 0.11 +1.0
310,366 + ABID97_RS26935 0.47 +0.6

Or see this region's nucleotide sequence