Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26460 and ABID97_RS26465 are separated by 40 nucleotides ABID97_RS26465 and ABID97_RS26470 overlap by 1 nucleotides ABID97_RS26470 and ABID97_RS26475 overlap by 4 nucleotides
ABID97_RS26460: ABID97_RS26460 - cytochrome c oxidase subunit I, at 209,358 to 211,322
_RS26460
ABID97_RS26465: ABID97_RS26465 - cytochrome c oxidase subunit II, at 211,363 to 212,328
_RS26465
ABID97_RS26470: ABID97_RS26470 - c-type cytochrome, at 212,328 to 212,888
_RS26470
ABID97_RS26475: ABID97_RS26475 - substrate-binding domain-containing protein, at 212,885 to 213,727
_RS26475
Position (kb) 211
212
213 Strain fitness (log2 ratio) -1
0
1 at 210.568 kb on + strand, within ABID97_RS26460 at 210.841 kb on + strand, within ABID97_RS26460 at 210.842 kb on - strand, within ABID97_RS26460 at 210.890 kb on - strand, within ABID97_RS26460 at 210.890 kb on - strand, within ABID97_RS26460 at 210.890 kb on - strand, within ABID97_RS26460 at 211.064 kb on - strand, within ABID97_RS26460 at 211.433 kb on + strand at 211.433 kb on + strand at 211.434 kb on - strand at 211.434 kb on - strand at 211.772 kb on + strand, within ABID97_RS26465 at 212.668 kb on + strand, within ABID97_RS26470
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 210,568 + ABID97_RS26460 0.62 +1.2 210,841 + ABID97_RS26460 0.75 -0.2 210,842 - ABID97_RS26460 0.76 -1.1 210,890 - ABID97_RS26460 0.78 -0.2 210,890 - ABID97_RS26460 0.78 -0.6 210,890 - ABID97_RS26460 0.78 -0.2 211,064 - ABID97_RS26460 0.87 -0.5 211,433 + -0.2 211,433 + +0.6 211,434 - +0.7 211,434 - +1.7 211,772 + ABID97_RS26465 0.42 -0.8 212,668 + ABID97_RS26470 0.61 -0.8
Or see this region's nucleotide sequence