Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25910

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25905 and ABID97_RS25910 are separated by 80 nucleotidesABID97_RS25910 and ABID97_RS25915 are separated by 34 nucleotides ABID97_RS25905: ABID97_RS25905 - ABC transporter substrate-binding protein, at 103,300 to 104,922 _RS25905 ABID97_RS25910: ABID97_RS25910 - FAD-binding oxidoreductase, at 105,003 to 106,295 _RS25910 ABID97_RS25915: ABID97_RS25915 - haloacid dehalogenase type II, at 106,330 to 106,995 _RS25915 Position (kb) 105 106 107Strain fitness (log2 ratio) -1 0 1at 104.258 kb on + strand, within ABID97_RS25905at 105.272 kb on - strand, within ABID97_RS25910at 105.422 kb on - strand, within ABID97_RS25910at 105.449 kb on - strand, within ABID97_RS25910at 105.772 kb on + strand, within ABID97_RS25910at 106.529 kb on + strand, within ABID97_RS25915at 106.529 kb on + strand, within ABID97_RS25915at 106.557 kb on - strand, within ABID97_RS25915at 106.976 kb on + strandat 106.977 kb on - strandat 106.977 kb on - strandat 107.012 kb on + strandat 107.013 kb on - strandat 107.073 kb on + strandat 107.073 kb on + strandat 107.077 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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104,258 + ABID97_RS25905 0.59 +0.5
105,272 - ABID97_RS25910 0.21 +1.7
105,422 - ABID97_RS25910 0.32 -0.5
105,449 - ABID97_RS25910 0.34 -1.0
105,772 + ABID97_RS25910 0.59 -1.7
106,529 + ABID97_RS25915 0.30 -0.7
106,529 + ABID97_RS25915 0.30 +0.3
106,557 - ABID97_RS25915 0.34 +0.2
106,976 + +0.2
106,977 - -0.5
106,977 - +1.0
107,012 + +0.8
107,013 - +0.2
107,073 + +0.3
107,073 + +0.3
107,077 + -0.0

Or see this region's nucleotide sequence