Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25165

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS25160 and ABID97_RS25165 are separated by 73 nucleotidesABID97_RS25165 and ABID97_RS25170 overlap by 4 nucleotides ABID97_RS25160: ABID97_RS25160 - SDR family oxidoreductase, at 5,212,570 to 5,213,340 _RS25160 ABID97_RS25165: ABID97_RS25165 - pseudouridine synthase, at 5,213,414 to 5,214,325 _RS25165 ABID97_RS25170: ABID97_RS25170 - leucine-rich repeat-containing protein kinase family protein, at 5,214,322 to 5,215,632 _RS25170 Position (kb) 5213 5214 5215Strain fitness (log2 ratio) -1 0 1 2at 5212.608 kb on + strandat 5212.609 kb on - strandat 5212.622 kb on + strandat 5212.622 kb on + strandat 5212.622 kb on + strandat 5212.622 kb on + strandat 5212.622 kb on + strandat 5212.623 kb on - strandat 5212.646 kb on + strandat 5212.650 kb on + strand, within ABID97_RS25160at 5212.854 kb on - strand, within ABID97_RS25160at 5212.859 kb on + strand, within ABID97_RS25160at 5212.859 kb on + strand, within ABID97_RS25160at 5212.859 kb on + strand, within ABID97_RS25160at 5212.859 kb on + strand, within ABID97_RS25160at 5212.859 kb on + strand, within ABID97_RS25160at 5212.859 kb on + strand, within ABID97_RS25160at 5212.860 kb on - strand, within ABID97_RS25160at 5212.860 kb on - strand, within ABID97_RS25160at 5212.860 kb on - strand, within ABID97_RS25160at 5212.860 kb on - strand, within ABID97_RS25160at 5212.860 kb on - strand, within ABID97_RS25160at 5213.033 kb on + strand, within ABID97_RS25160at 5213.033 kb on + strand, within ABID97_RS25160at 5213.100 kb on - strand, within ABID97_RS25160at 5213.225 kb on + strand, within ABID97_RS25160at 5213.225 kb on + strand, within ABID97_RS25160at 5213.225 kb on + strand, within ABID97_RS25160at 5213.225 kb on + strand, within ABID97_RS25160at 5213.225 kb on + strand, within ABID97_RS25160at 5213.225 kb on + strand, within ABID97_RS25160at 5213.225 kb on + strand, within ABID97_RS25160at 5213.225 kb on + strand, within ABID97_RS25160at 5213.225 kb on + strand, within ABID97_RS25160at 5213.226 kb on - strand, within ABID97_RS25160at 5213.226 kb on - strand, within ABID97_RS25160at 5213.226 kb on - strand, within ABID97_RS25160at 5213.389 kb on + strandat 5213.389 kb on + strandat 5213.390 kb on - strandat 5213.390 kb on - strandat 5213.390 kb on - strandat 5213.556 kb on + strand, within ABID97_RS25165at 5213.757 kb on + strand, within ABID97_RS25165at 5213.758 kb on - strand, within ABID97_RS25165at 5213.808 kb on + strand, within ABID97_RS25165at 5213.808 kb on + strand, within ABID97_RS25165at 5213.847 kb on + strand, within ABID97_RS25165at 5213.979 kb on + strand, within ABID97_RS25165at 5213.980 kb on - strand, within ABID97_RS25165at 5213.980 kb on - strand, within ABID97_RS25165at 5214.097 kb on - strand, within ABID97_RS25165at 5214.099 kb on + strand, within ABID97_RS25165at 5214.099 kb on + strand, within ABID97_RS25165at 5214.099 kb on + strand, within ABID97_RS25165at 5214.099 kb on + strand, within ABID97_RS25165at 5214.102 kb on + strand, within ABID97_RS25165at 5214.102 kb on + strand, within ABID97_RS25165at 5214.102 kb on + strand, within ABID97_RS25165at 5214.102 kb on + strand, within ABID97_RS25165at 5214.102 kb on + strand, within ABID97_RS25165at 5214.103 kb on - strand, within ABID97_RS25165at 5214.602 kb on + strand, within ABID97_RS25170at 5214.603 kb on - strand, within ABID97_RS25170at 5214.603 kb on - strand, within ABID97_RS25170at 5214.710 kb on + strand, within ABID97_RS25170at 5214.711 kb on - strand, within ABID97_RS25170at 5214.711 kb on - strand, within ABID97_RS25170

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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5,212,608 + -0.8
5,212,609 - +0.0
5,212,622 + +0.2
5,212,622 + -0.1
5,212,622 + -0.1
5,212,622 + -0.1
5,212,622 + -0.4
5,212,623 - -0.1
5,212,646 + -0.7
5,212,650 + ABID97_RS25160 0.10 -0.1
5,212,854 - ABID97_RS25160 0.37 -0.2
5,212,859 + ABID97_RS25160 0.37 -0.0
5,212,859 + ABID97_RS25160 0.37 +0.2
5,212,859 + ABID97_RS25160 0.37 -0.0
5,212,859 + ABID97_RS25160 0.37 -0.7
5,212,859 + ABID97_RS25160 0.37 -0.1
5,212,859 + ABID97_RS25160 0.37 +0.1
5,212,860 - ABID97_RS25160 0.38 +0.7
5,212,860 - ABID97_RS25160 0.38 -0.0
5,212,860 - ABID97_RS25160 0.38 -0.4
5,212,860 - ABID97_RS25160 0.38 -0.1
5,212,860 - ABID97_RS25160 0.38 +0.4
5,213,033 + ABID97_RS25160 0.60 +0.5
5,213,033 + ABID97_RS25160 0.60 +0.2
5,213,100 - ABID97_RS25160 0.69 +1.2
5,213,225 + ABID97_RS25160 0.85 -0.2
5,213,225 + ABID97_RS25160 0.85 +0.4
5,213,225 + ABID97_RS25160 0.85 +0.3
5,213,225 + ABID97_RS25160 0.85 -0.2
5,213,225 + ABID97_RS25160 0.85 -0.2
5,213,225 + ABID97_RS25160 0.85 -0.6
5,213,225 + ABID97_RS25160 0.85 -0.6
5,213,225 + ABID97_RS25160 0.85 -0.0
5,213,225 + ABID97_RS25160 0.85 -0.2
5,213,226 - ABID97_RS25160 0.85 -0.1
5,213,226 - ABID97_RS25160 0.85 +0.2
5,213,226 - ABID97_RS25160 0.85 +0.2
5,213,389 + -0.7
5,213,389 + -0.4
5,213,390 - -0.3
5,213,390 - -0.1
5,213,390 - +2.1
5,213,556 + ABID97_RS25165 0.16 +0.3
5,213,757 + ABID97_RS25165 0.38 +1.0
5,213,758 - ABID97_RS25165 0.38 +0.3
5,213,808 + ABID97_RS25165 0.43 +0.4
5,213,808 + ABID97_RS25165 0.43 -0.0
5,213,847 + ABID97_RS25165 0.47 +1.0
5,213,979 + ABID97_RS25165 0.62 +0.4
5,213,980 - ABID97_RS25165 0.62 -0.5
5,213,980 - ABID97_RS25165 0.62 +0.0
5,214,097 - ABID97_RS25165 0.75 +1.1
5,214,099 + ABID97_RS25165 0.75 +0.2
5,214,099 + ABID97_RS25165 0.75 -0.2
5,214,099 + ABID97_RS25165 0.75 -0.5
5,214,099 + ABID97_RS25165 0.75 +1.7
5,214,102 + ABID97_RS25165 0.75 +0.2
5,214,102 + ABID97_RS25165 0.75 +1.2
5,214,102 + ABID97_RS25165 0.75 +0.6
5,214,102 + ABID97_RS25165 0.75 -1.0
5,214,102 + ABID97_RS25165 0.75 +0.2
5,214,103 - ABID97_RS25165 0.76 -0.7
5,214,602 + ABID97_RS25170 0.21 -0.9
5,214,603 - ABID97_RS25170 0.21 -0.5
5,214,603 - ABID97_RS25170 0.21 +1.8
5,214,710 + ABID97_RS25170 0.30 -0.1
5,214,711 - ABID97_RS25170 0.30 +1.5
5,214,711 - ABID97_RS25170 0.30 +0.8

Or see this region's nucleotide sequence