Strain Fitness in Variovorax sp. OAS795 around ABID97_RS19395

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS19385 and ABID97_RS19390 overlap by 59 nucleotidesABID97_RS19390 and ABID97_RS19395 are separated by 48 nucleotidesABID97_RS19395 and ABID97_RS19400 are separated by 101 nucleotides ABID97_RS19385: ABID97_RS19385 - short-chain fatty acyl-CoA regulator family protein, at 4,001,528 to 4,003,039 _RS19385 ABID97_RS19390: ABID97_RS19390 - hypothetical protein, at 4,002,981 to 4,003,844 _RS19390 ABID97_RS19395: ABID97_RS19395 - 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase, at 4,003,893 to 4,006,238 _RS19395 ABID97_RS19400: ABID97_RS19400 - LysR family transcriptional regulator, at 4,006,340 to 4,007,266 _RS19400 Position (kb) 4003 4004 4005 4006 4007Strain fitness (log2 ratio) -1 0 1 2at 4003.463 kb on - strand, within ABID97_RS19390at 4003.693 kb on + strand, within ABID97_RS19390at 4003.694 kb on - strand, within ABID97_RS19390at 4004.096 kb on - strandat 4004.650 kb on + strand, within ABID97_RS19395at 4005.830 kb on - strand, within ABID97_RS19395at 4005.836 kb on - strand, within ABID97_RS19395at 4005.836 kb on - strand, within ABID97_RS19395at 4005.836 kb on - strand, within ABID97_RS19395at 4006.040 kb on - strandat 4006.040 kb on - strandat 4007.097 kb on - strand, within ABID97_RS19400at 4007.160 kb on - strand, within ABID97_RS19400

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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4,003,463 - ABID97_RS19390 0.56 -1.0
4,003,693 + ABID97_RS19390 0.82 -0.1
4,003,694 - ABID97_RS19390 0.83 -0.2
4,004,096 - -0.7
4,004,650 + ABID97_RS19395 0.32 +1.6
4,005,830 - ABID97_RS19395 0.83 -1.2
4,005,836 - ABID97_RS19395 0.83 -1.0
4,005,836 - ABID97_RS19395 0.83 -1.2
4,005,836 - ABID97_RS19395 0.83 -0.1
4,006,040 - -1.2
4,006,040 - -0.6
4,007,097 - ABID97_RS19400 0.82 +0.6
4,007,160 - ABID97_RS19400 0.88 +2.2

Or see this region's nucleotide sequence