Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19385 and ABID97_RS19390 overlap by 59 nucleotides ABID97_RS19390 and ABID97_RS19395 are separated by 48 nucleotides ABID97_RS19395 and ABID97_RS19400 are separated by 101 nucleotides
ABID97_RS19385: ABID97_RS19385 - short-chain fatty acyl-CoA regulator family protein, at 4,001,528 to 4,003,039
_RS19385
ABID97_RS19390: ABID97_RS19390 - hypothetical protein, at 4,002,981 to 4,003,844
_RS19390
ABID97_RS19395: ABID97_RS19395 - 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase, at 4,003,893 to 4,006,238
_RS19395
ABID97_RS19400: ABID97_RS19400 - LysR family transcriptional regulator, at 4,006,340 to 4,007,266
_RS19400
Position (kb)
4003
4004
4005
4006
4007 Strain fitness (log2 ratio)
-1
0
1
2 at 4003.463 kb on - strand, within ABID97_RS19390 at 4003.693 kb on + strand, within ABID97_RS19390 at 4003.694 kb on - strand, within ABID97_RS19390 at 4004.096 kb on - strand at 4004.650 kb on + strand, within ABID97_RS19395 at 4005.830 kb on - strand, within ABID97_RS19395 at 4005.836 kb on - strand, within ABID97_RS19395 at 4005.836 kb on - strand, within ABID97_RS19395 at 4005.836 kb on - strand, within ABID97_RS19395 at 4006.040 kb on - strand at 4006.040 kb on - strand at 4007.097 kb on - strand, within ABID97_RS19400 at 4007.160 kb on - strand, within ABID97_RS19400
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 4,003,463 - ABID97_RS19390 0.56 -1.0 4,003,693 + ABID97_RS19390 0.82 -0.1 4,003,694 - ABID97_RS19390 0.83 -0.2 4,004,096 - -0.7 4,004,650 + ABID97_RS19395 0.32 +1.6 4,005,830 - ABID97_RS19395 0.83 -1.2 4,005,836 - ABID97_RS19395 0.83 -1.0 4,005,836 - ABID97_RS19395 0.83 -1.2 4,005,836 - ABID97_RS19395 0.83 -0.1 4,006,040 - -1.2 4,006,040 - -0.6 4,007,097 - ABID97_RS19400 0.82 +0.6 4,007,160 - ABID97_RS19400 0.88 +2.2
Or see this region's nucleotide sequence