Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18950

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18940 and ABID97_RS18945 are separated by 91 nucleotidesABID97_RS18945 and ABID97_RS18950 are separated by 19 nucleotidesABID97_RS18950 and ABID97_RS18955 are separated by 551 nucleotides ABID97_RS18940: ABID97_RS18940 - Crp/Fnr family transcriptional regulator, at 3,900,731 to 3,901,483 _RS18940 ABID97_RS18945: ABID97_RS18945 - ABC transporter ATP-binding protein, at 3,901,575 to 3,902,294 _RS18945 ABID97_RS18950: ABID97_RS18950 - ABC transporter ATP-binding protein, at 3,902,314 to 3,903,141 _RS18950 ABID97_RS18955: ABID97_RS18955 - branched-chain amino acid ABC transporter permease, at 3,903,693 to 3,904,724 _RS18955 Position (kb) 3902 3903 3904Strain fitness (log2 ratio) -1 0 1 2at 3902.002 kb on - strand, within ABID97_RS18945at 3902.002 kb on - strand, within ABID97_RS18945at 3902.405 kb on + strand, within ABID97_RS18950at 3902.405 kb on + strand, within ABID97_RS18950at 3902.406 kb on - strand, within ABID97_RS18950at 3903.319 kb on - strandat 3903.438 kb on + strandat 3903.438 kb on + strandat 3903.438 kb on + strandat 3903.438 kb on + strandat 3903.439 kb on - strandat 3903.944 kb on - strand, within ABID97_RS18955at 3904.118 kb on - strand, within ABID97_RS18955

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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3,902,002 - ABID97_RS18945 0.59 +0.3
3,902,002 - ABID97_RS18945 0.59 -0.0
3,902,405 + ABID97_RS18950 0.11 -1.2
3,902,405 + ABID97_RS18950 0.11 -0.8
3,902,406 - ABID97_RS18950 0.11 -0.5
3,903,319 - -0.5
3,903,438 + +0.0
3,903,438 + +1.6
3,903,438 + -0.3
3,903,438 + +2.2
3,903,439 - +0.3
3,903,944 - ABID97_RS18955 0.24 +0.6
3,904,118 - ABID97_RS18955 0.41 +0.4

Or see this region's nucleotide sequence