Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS18940 and ABID97_RS18945 are separated by 91 nucleotides ABID97_RS18945 and ABID97_RS18950 are separated by 19 nucleotides ABID97_RS18950 and ABID97_RS18955 are separated by 551 nucleotides
ABID97_RS18940: ABID97_RS18940 - Crp/Fnr family transcriptional regulator, at 3,900,731 to 3,901,483
_RS18940
ABID97_RS18945: ABID97_RS18945 - ABC transporter ATP-binding protein, at 3,901,575 to 3,902,294
_RS18945
ABID97_RS18950: ABID97_RS18950 - ABC transporter ATP-binding protein, at 3,902,314 to 3,903,141
_RS18950
ABID97_RS18955: ABID97_RS18955 - branched-chain amino acid ABC transporter permease, at 3,903,693 to 3,904,724
_RS18955
Position (kb)
3902
3903
3904 Strain fitness (log2 ratio)
-1
0
1
2 at 3902.002 kb on - strand, within ABID97_RS18945 at 3902.002 kb on - strand, within ABID97_RS18945 at 3902.405 kb on + strand, within ABID97_RS18950 at 3902.405 kb on + strand, within ABID97_RS18950 at 3902.406 kb on - strand, within ABID97_RS18950 at 3903.319 kb on - strand at 3903.438 kb on + strand at 3903.438 kb on + strand at 3903.438 kb on + strand at 3903.438 kb on + strand at 3903.439 kb on - strand at 3903.944 kb on - strand, within ABID97_RS18955 at 3904.118 kb on - strand, within ABID97_RS18955
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 3,902,002 - ABID97_RS18945 0.59 +0.3 3,902,002 - ABID97_RS18945 0.59 -0.0 3,902,405 + ABID97_RS18950 0.11 -1.2 3,902,405 + ABID97_RS18950 0.11 -0.8 3,902,406 - ABID97_RS18950 0.11 -0.5 3,903,319 - -0.5 3,903,438 + +0.0 3,903,438 + +1.6 3,903,438 + -0.3 3,903,438 + +2.2 3,903,439 - +0.3 3,903,944 - ABID97_RS18955 0.24 +0.6 3,904,118 - ABID97_RS18955 0.41 +0.4
Or see this region's nucleotide sequence