Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18280

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18275 and ABID97_RS18280 overlap by 4 nucleotidesABID97_RS18280 and ABID97_RS18285 are separated by 410 nucleotides ABID97_RS18275: ABID97_RS18275 - DUF6361 family protein, at 3,776,178 to 3,777,410 _RS18275 ABID97_RS18280: ABID97_RS18280 - hypothetical protein, at 3,777,407 to 3,777,676 _RS18280 ABID97_RS18285: ABID97_RS18285 - hypothetical protein, at 3,778,087 to 3,778,836 _RS18285 Position (kb) 3777 3778Strain fitness (log2 ratio) -1 0 1at 3776.726 kb on - strand, within ABID97_RS18275at 3776.729 kb on + strand, within ABID97_RS18275at 3777.216 kb on + strand, within ABID97_RS18275at 3777.217 kb on - strand, within ABID97_RS18275at 3777.217 kb on - strand, within ABID97_RS18275at 3777.506 kb on + strand, within ABID97_RS18280at 3777.540 kb on - strand, within ABID97_RS18280at 3777.660 kb on + strandat 3777.660 kb on + strandat 3777.661 kb on - strandat 3777.661 kb on - strandat 3778.445 kb on - strand, within ABID97_RS18285at 3778.541 kb on + strand, within ABID97_RS18285at 3778.618 kb on + strand, within ABID97_RS18285

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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3,776,726 - ABID97_RS18275 0.44 +1.1
3,776,729 + ABID97_RS18275 0.45 -0.2
3,777,216 + ABID97_RS18275 0.84 -0.4
3,777,217 - ABID97_RS18275 0.84 +0.4
3,777,217 - ABID97_RS18275 0.84 -0.4
3,777,506 + ABID97_RS18280 0.37 -1.3
3,777,540 - ABID97_RS18280 0.49 -0.5
3,777,660 + +1.6
3,777,660 + -0.1
3,777,661 - -0.2
3,777,661 - +0.3
3,778,445 - ABID97_RS18285 0.48 +0.1
3,778,541 + ABID97_RS18285 0.61 -0.8
3,778,618 + ABID97_RS18285 0.71 +1.6

Or see this region's nucleotide sequence