Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS17355 and ABID97_RS17360 are separated by 150 nucleotides ABID97_RS17360 and ABID97_RS17365 are separated by 184 nucleotides
ABID97_RS17355: ABID97_RS17355 - efflux RND transporter periplasmic adaptor subunit, at 3,587,787 to 3,589,037
_RS17355
ABID97_RS17360: ABID97_RS17360 - alpha/beta hydrolase, at 3,589,188 to 3,590,069
_RS17360
ABID97_RS17365: ABID97_RS17365 - LysR family transcriptional regulator, at 3,590,254 to 3,591,168
_RS17365
Position (kb)
3589
3590
3591 Strain fitness (log2 ratio)
-1
0
1 at 3588.352 kb on + strand, within ABID97_RS17355 at 3588.475 kb on + strand, within ABID97_RS17355 at 3588.565 kb on + strand, within ABID97_RS17355 at 3588.566 kb on - strand, within ABID97_RS17355 at 3588.691 kb on + strand, within ABID97_RS17355 at 3589.190 kb on - strand at 3589.190 kb on - strand at 3589.190 kb on - strand at 3589.190 kb on - strand at 3589.742 kb on - strand, within ABID97_RS17360 at 3589.952 kb on - strand, within ABID97_RS17360 at 3590.108 kb on - strand at 3590.146 kb on + strand at 3590.146 kb on + strand at 3590.449 kb on + strand, within ABID97_RS17365 at 3590.449 kb on + strand, within ABID97_RS17365 at 3590.450 kb on - strand, within ABID97_RS17365 at 3590.450 kb on - strand, within ABID97_RS17365 at 3590.450 kb on - strand, within ABID97_RS17365 at 3590.830 kb on + strand, within ABID97_RS17365 at 3590.831 kb on - strand, within ABID97_RS17365
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 3,588,352 + ABID97_RS17355 0.45 -0.4 3,588,475 + ABID97_RS17355 0.55 -0.2 3,588,565 + ABID97_RS17355 0.62 -0.4 3,588,566 - ABID97_RS17355 0.62 -0.6 3,588,691 + ABID97_RS17355 0.72 -0.2 3,589,190 - +0.6 3,589,190 - +0.9 3,589,190 - +0.2 3,589,190 - -0.6 3,589,742 - ABID97_RS17360 0.63 -0.7 3,589,952 - ABID97_RS17360 0.87 +0.0 3,590,108 - -1.2 3,590,146 + +0.2 3,590,146 + -0.3 3,590,449 + ABID97_RS17365 0.21 +0.2 3,590,449 + ABID97_RS17365 0.21 +1.0 3,590,450 - ABID97_RS17365 0.21 +0.3 3,590,450 - ABID97_RS17365 0.21 +1.6 3,590,450 - ABID97_RS17365 0.21 +0.3 3,590,830 + ABID97_RS17365 0.63 -0.3 3,590,831 - ABID97_RS17365 0.63 -0.2
Or see this region's nucleotide sequence