Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16780

Experiment: no phage control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16770 and ABID97_RS16775 overlap by 4 nucleotidesABID97_RS16775 and ABID97_RS16780 overlap by 4 nucleotidesABID97_RS16780 and ABID97_RS16785 overlap by 1 nucleotides ABID97_RS16770: ABID97_RS16770 - hydroxymyristoyl-ACP dehydratase, at 3,468,670 to 3,469,143 _RS16770 ABID97_RS16775: ABID97_RS16775 - class I SAM-dependent methyltransferase, at 3,469,140 to 3,469,904 _RS16775 ABID97_RS16780: ABID97_RS16780 - polysaccharide deacetylase family protein, at 3,469,901 to 3,470,743 _RS16780 ABID97_RS16785: ABID97_RS16785 - transporter, at 3,470,743 to 3,473,142 _RS16785 Position (kb) 3469 3470 3471Strain fitness (log2 ratio) -1 0 1at 3468.950 kb on + strand, within ABID97_RS16770at 3469.456 kb on + strand, within ABID97_RS16775at 3469.456 kb on + strand, within ABID97_RS16775at 3469.456 kb on + strand, within ABID97_RS16775at 3469.456 kb on + strand, within ABID97_RS16775at 3469.457 kb on - strand, within ABID97_RS16775at 3469.457 kb on - strand, within ABID97_RS16775at 3469.457 kb on - strand, within ABID97_RS16775at 3469.606 kb on + strand, within ABID97_RS16775at 3469.834 kb on + strandat 3469.976 kb on + strandat 3469.976 kb on + strandat 3469.988 kb on + strand, within ABID97_RS16780

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Per-strain Table

Position Strand Gene LocusTag Fraction no phage control
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3,468,950 + ABID97_RS16770 0.59 -0.3
3,469,456 + ABID97_RS16775 0.41 -0.4
3,469,456 + ABID97_RS16775 0.41 +0.2
3,469,456 + ABID97_RS16775 0.41 +0.2
3,469,456 + ABID97_RS16775 0.41 -0.1
3,469,457 - ABID97_RS16775 0.41 +0.4
3,469,457 - ABID97_RS16775 0.41 -0.2
3,469,457 - ABID97_RS16775 0.41 -0.1
3,469,606 + ABID97_RS16775 0.61 -0.7
3,469,834 + -0.7
3,469,976 + -0.7
3,469,976 + +0.4
3,469,988 + ABID97_RS16780 0.10 -1.6

Or see this region's nucleotide sequence