Experiment: no phage control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS16770 and ABID97_RS16775 overlap by 4 nucleotides ABID97_RS16775 and ABID97_RS16780 overlap by 4 nucleotides ABID97_RS16780 and ABID97_RS16785 overlap by 1 nucleotides
ABID97_RS16770: ABID97_RS16770 - hydroxymyristoyl-ACP dehydratase, at 3,468,670 to 3,469,143
_RS16770
ABID97_RS16775: ABID97_RS16775 - class I SAM-dependent methyltransferase, at 3,469,140 to 3,469,904
_RS16775
ABID97_RS16780: ABID97_RS16780 - polysaccharide deacetylase family protein, at 3,469,901 to 3,470,743
_RS16780
ABID97_RS16785: ABID97_RS16785 - transporter, at 3,470,743 to 3,473,142
_RS16785
Position (kb)
3469
3470
3471 Strain fitness (log2 ratio)
-1
0
1 at 3468.950 kb on + strand, within ABID97_RS16770 at 3469.456 kb on + strand, within ABID97_RS16775 at 3469.456 kb on + strand, within ABID97_RS16775 at 3469.456 kb on + strand, within ABID97_RS16775 at 3469.456 kb on + strand, within ABID97_RS16775 at 3469.457 kb on - strand, within ABID97_RS16775 at 3469.457 kb on - strand, within ABID97_RS16775 at 3469.457 kb on - strand, within ABID97_RS16775 at 3469.606 kb on + strand, within ABID97_RS16775 at 3469.834 kb on + strand at 3469.976 kb on + strand at 3469.976 kb on + strand at 3469.988 kb on + strand, within ABID97_RS16780
Per-strain Table
Position Strand Gene LocusTag Fraction no phage control remove 3,468,950 + ABID97_RS16770 0.59 -0.3 3,469,456 + ABID97_RS16775 0.41 -0.4 3,469,456 + ABID97_RS16775 0.41 +0.2 3,469,456 + ABID97_RS16775 0.41 +0.2 3,469,456 + ABID97_RS16775 0.41 -0.1 3,469,457 - ABID97_RS16775 0.41 +0.4 3,469,457 - ABID97_RS16775 0.41 -0.2 3,469,457 - ABID97_RS16775 0.41 -0.1 3,469,606 + ABID97_RS16775 0.61 -0.7 3,469,834 + -0.7 3,469,976 + -0.7 3,469,976 + +0.4 3,469,988 + ABID97_RS16780 0.10 -1.6
Or see this region's nucleotide sequence